Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq985 331 1e-85 seq159 114 1e-20 seq682 109 6e-19 seq419 98.7 1e-15 >seq985 Length=76026 Score = 331 bits (366), Expect = 1e-85 Identities = 521/741 (70%), Gaps = 4/741 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | |||||||||| ||| | || |||||||| |||| || ||||| Sbjct 19072 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 19013 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| |||| ||| | ||||| || ||||| |||| || |||||| Sbjct 19012 ATCGAGACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCACGCTGTTC 18953 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| ||||| ||||| || | ||| ||||||||| || | ||| |||| ||| Sbjct 18952 AACGCCGGTACCCCCCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGAC 18893 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 |||||||| ||||||||||| ||||||||| || || | |||||||||| |||| Sbjct 18892 TCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGC 18833 Query 53420 GGTATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 || |||||| | | | | | ||| |||| |||| ||| | ||| ||| ||||| Sbjct 18832 GGGATCGGTCTTTCGATTCAC-AACATCCGCGCGACCGGTTCGTACATCGCGGGCACGAA 18774 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 18773 CGGCTACTCGAACGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACGT 18714 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 |||| || || ||||| || ||||||| |||||||| |||||||||||||| Sbjct 18713 GGACCAAGGAGGCAATAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGTGGCACGC 18654 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 ||||| | || || ||||| || || ||| || || | ||||| | ||| || Sbjct 18653 GGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAAGAAGAAGTCCGCGCGCG 18594 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718 ||||| || || |||||||| || |||||||||||| || || ||| || ||| Sbjct 18593 AGACCTCTTCTTCGCGCTGTGGATCCCCGACCTCTTCATGGAACGCGTCGAGCAGAACGC 18534 Query 53719 GGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGA 53778 |||||| ||| | ||||| ||| ||||||||||| | |||||||| || || Sbjct 18533 CGAGTGGCCGCTGTTCTGCCCCGCCGAAGCGCCCGGCCTCCACGAGGTCTACGGCGACGA 18474 Query 53779 GTTTAACGAGATGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | | | | | ||| || ||||| |||| ||| |||| | | || || Sbjct 18473 GTTCAGGGCGCT-TTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACGATCTCGG 18415 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 ||| || | ||| | || || ||| | |||||| |||||||| | || | |||| Sbjct 18414 CGCAGAAGCTGTGGTACGCCATTCTCGAAGCCCAGGTTGAGACGGGCAATCCCTTCATGC 18355 Query 53898 GCTACAAGGATTCGGTCAACG 53918 ||||||||| | | ||||| Sbjct 18354 TCTACAAGGACGCCGCCAACG 18334 >seq159 Length=60006 Score = 114 bits (126), Expect = 1e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| |||||||||| ||| || ||||| || || || |||| ||||| ||||| || Sbjct 20686 GTGAAGATGTAACGAGCGCTGGCGGCATCTTTACCGCCCTGCAAC-CGCGTTCCGAACTG 20744 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| |||| || | || ||||| |||||| | ||| ||||||||||| || | ||| Sbjct 20745 TCCGTTCGGGTCGAGGACGTTCAAGTTGTTTGAGCCGACAAAGTTTTGCGCGAGACCGAC 20804 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 |||||| ||||| || | || || ||||| || |||| ||||||| | ||||| Sbjct 20805 AATCGTGCCTTGCAGCGAGACGTCGCCGTGGTGGTAGGCCGAATGCTCCGAGATATAGCC 20864 Query 117484 CGCCAGCTGAGCCACCT 117500 || ||||| | |||| Sbjct 20865 CGAAAGCTGTCCGACCT 20881 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||| || || || || ||||||||| |||||| Sbjct 20686 GTGAAGATGTAACGAGCGCTGGCGGCATCTTTACCGCCCTGCAACCGCGTTCCGAACTGT 20745 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||||| ||| | |||||| | ||| || || || || || | | ||| Sbjct 20746 CCGTTCGGGTCGAGGACGTTCAAGTTGTTTGAGCCGACAAAGTTTTGCGCGAGACCGACA 20805 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 |||||||| ||||| | || |||||||| || |||| ||||||| ||| || ||| Sbjct 20806 ATCGTGCCTTGCAGCGAGACGTCGCCGTGGTGGTAGGCCGAATGCTCCGAGATATAGCCC 20865 Query 152209 G 152209 | Sbjct 20866 G 20866 >seq682 Length=96692 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| ||| ||||| || ||||| | |||||||| || || || ||| Sbjct 91030 AAACTCGCGGACCGGGTGGGTCTCGCCCGTCGCGAGGACAAAGTCGTCCGGCTCGTCCTG 90971 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || |||||| |||||||| |||||||||| || | ||||| |||||||| |||||||| Sbjct 90970 CTGCAGCATGCGCCACATGCCCTCGACGTAGTCACGGGCGTGGCCCCAGTCACGCTTGGC 90911 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 90910 GTCGAGGTTACCGAG 90896 >seq419 Length=61061 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 124488 TCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATC 124547 |||| |||||| |||| | ||| ||||| || || | | |||||||| || || || Sbjct 15472 TCGACAAACTCGCGGACGGGGTGAGTCTCGCCGGTTGCGAGGACGAAATCGTCCGGC-TC 15530 Query 124548 GACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCG 124606 | || |||||||||| |||||||| | | |||||| || ||||| |||||||| || Sbjct 15531 GTCTTGCTGCAACATGCGCCACATGCCCTCGACGTAATCGCGGGCGTGGCCCCAGTCACG 15590 Query 124607 CTTGGCATCCAGGTTTCCGAG 124627 |||||| || ||||||||||| Sbjct 15591 CTTGGCGTCAAGGTTTCCGAG 15611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| || || || | || || || || || || || Sbjct 15477 AAACTCGCGGACGGGGTGAGTCTCGCCGGTTGCGAGGACGAAATCGTCCGGCTCGTCTTG 15536 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || | |||| |||||||| ||||||||||||| | ||||| |||||||| |||||||| Sbjct 15537 CTGCAACATGCGCCACATGCCCTCGACGTAATCGCGGGCGTGGCCCCAGTCACGCTTGGC 15596 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 15597 GTCAAGGTTTCCGAG 15611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208927233200