Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq381 152 6e-32 seq985 132 5e-26 seq159 131 2e-25 seq544 123 3e-23 seq893 111 2e-19 seq236 98.7 1e-15 >seq381 Length=90481 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || || ||||| || || || ||||| ||||| Sbjct 282 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCTCG 223 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 222 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 163 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| |||||||| | || ||||| | || || || Sbjct 162 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 103 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || || ||| | ||||| || || || Sbjct 102 ATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTCCGTGGCGG 56 >seq985 Length=76026 Score = 132 bits (146), Expect = 5e-26 Identities = 486/748 (65%), Gaps = 21/748 (3%) Strand=Plus/Plus Query 81014 CGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGA 81073 ||||| |||||||||||| |||| | || | || ||||| ||||| | | ||| | Sbjct 18334 CGTTGGCGGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCAACCTGGGCTTCGAGAA 18393 Query 81074 TGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTG-CGGAATTTGCCTTCGGCCACA 81129 |||||| ||| | || ||||| || | |||| || | ||||| | Sbjct 18394 TGGCGTACCACAGCTTCTGCGCCGAGATCGTGCGCTTGGCGCGACCCTCCTTCT----CG 18449 Query 81130 TACTTGGCGTAA-GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT- 81187 ||||| || || || | | ||||| | | |||| | || |||| | |||| || Sbjct 18450 TACTTCTCGAAAAGCGCCCT-GAACTCGTCGCCGTAGACCTCGTGGAGGCC-GGGCGCTT 18507 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC-ATGAAAGCGTCA 81246 || ||||| | ||| |||| |||| || | ||| || || ||| ||||| ||| Sbjct 18508 CGGCGGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGAC-GCGTTCCATGAAGAGGTCG 18566 Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 |||||||| || ||| ||| ||||| || ||| | || || | || ||||| | Sbjct 18567 GGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTG 18626 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | ||||| ||||| | ||||||||| ||||| ||||| || || | |||| || Sbjct 18627 CGGAGGTCGAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCG 18686 Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || || | ||| || |||| |||||||| || || ||| || || || | | Sbjct 18687 CCGGGTCGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGC 18746 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 ||||| | ||| || | || | |||||||| ||| |||| ||| || | ||||| Sbjct 18747 ATAGGCACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGG 18806 Query 81484 ACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 | ||| || ||||||||||| || || | ||| || || | || || || Sbjct 18807 ATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTG 18866 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | || || || || || ||||| || | | |||| | | ||| ||| || Sbjct 18867 AGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAG 18926 Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663 | || ||| | ||||| |||||||| || || | ||||||| |||| || || Sbjct 18927 AGTTGCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGC 18986 Query 81664 TTTGACATCAGGTCATAGGTTTCCTT--GACGCGTGGAATATCGTCACCGTGAATACCGA 81721 | ||||||| || ||||| || | |||| || || ||| ||||| || |||| Sbjct 18987 TCCGACATCAAGTTGTAGGTCTCGATAGCACGCTTG--ATGTCGGGTCCGTGGATGCCGA 19044 Query 81722 TAGCTACACGCATAAACATGTACTGGGG 81749 || || ||||| | ||||| ||| || Sbjct 19045 CGGCAACGCGCATGAGCATGTGCTGAGG 19072 >seq159 Length=60006 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| |||||||| | | ||||| ||||||| ||||||||||| | | Sbjct 20881 AGGTCGGACAGCTTTCGGGCTATATCTCGGAGCATTCGGCCTACCACCACGGCGACGTCT 20822 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 |||| || ||||| |||||| || || || ||||||||||| |||| ||| ||||| Sbjct 20821 CGCTGCAAGGCACGATTGTCGGTCTCGCGCAAAACTTTGTCGGCTCAAACAACTTGAACG 20762 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || |||||||| || || ||| | || || || ||||| || ||| Sbjct 20761 TCCTCGACCCGAACGGACAGTTCGGAACGCGGTTGCAGGGCGGTAAAGATGCCGCCAGCG 20702 Query 32234 CCCGTTACATCTTCACC 32250 | ||||||||||||||| Sbjct 20701 CTCGTTACATCTTCACC 20685 >seq544 Length=109881 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || || ||||| ||||| || | || | || | ||| Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 82737 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || |||||||||||||| || ||||| || Sbjct 82736 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 82677 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | || || || | ||||| || |||| ||||| || || || Sbjct 82676 AAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 82617 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | || | |||||||| Sbjct 82616 CACCTCGTCCTCCGCTTGCGCGGTGG 82591 >seq893 Length=83276 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || |||||||| ||||| || | || | || | ||||| || || |||||| Sbjct 39087 ATCACCCTTGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 39146 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||| || || || |||||||||||||| || ||||| || ||||| |||||||| Sbjct 39147 AAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 39206 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | || ||||| | ||||| || |||| ||||| || || || || || ||| Sbjct 39207 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTC 39260 >seq236 Length=10160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27504 GGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 |||||| || || || ||||||||||| || || ||||| || ||||| |||||||| | Sbjct 10160 GGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGG 10101 Query 27564 TCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || ||||| | || || || |||||||||| || || || || || ||| | || || Sbjct 10100 CCGCACCCTCTCGGATTACAACATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGCCT 10041 Query 27624 TCGCGGTGGACA 27635 ||| |||||||| Sbjct 10040 TCGTGGTGGACA 10029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303028738080