Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq381 113 4e-20
seq544 102 7e-17
seq893 86.0 5e-12
>seq381
Length=90481
Score = 113 bits (124), Expect = 4e-20
Identities = 164/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
||||||| || ||||| || || ||||| || ||| | || || || || || || | |
Sbjct 284 CCATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCT 225
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| ||| |||| || | ||||| || || || ||||| || ||||| || ||||| |
Sbjct 224 CGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACC 165
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| ||||| | || | |||||||| || | || ||| | ||| | || |||||||
Sbjct 164 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACA 105
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| ||||||||||||||| | || | || | ||| | || || |||||
Sbjct 104 ACATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTCCGTGGCGGCAT 53
>seq544
Length=109881
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068
|| || |||||| | || || || || || || |||||||| |||| || | |||||
Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 82737
Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128
|| || || ||||| || ||||| || ||||| || |||||| | || | ||||||
Sbjct 82736 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 82677
Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188
|| || | || ||| | || |||| || |||||||| || |||||||||||| |
Sbjct 82676 AAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 82617
Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| | || | || ||||| ||||| ||
Sbjct 82616 CACCTCGTCCTCCGCTTGCGCGGTGGTAT 82588
>seq893
Length=83276
Score = 86.0 bits (94), Expect = 5e-12
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083
|| || ||||| || || |||| ||| |||| || | ||||| || || || |||
Sbjct 39087 ATCACCCTTGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 39146
Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143
|| || ||||| || ||||| || |||||| | || | |||||||| || | || |||
Sbjct 39147 AAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 39206
Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185
| ||| | || || |||||||| || ||||||||||||
Sbjct 39207 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 39248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434912778679680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |