Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq381 113 4e-20 seq544 102 7e-17 seq893 86.0 5e-12 >seq381 Length=90481 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || ||||| || || ||||| || ||| | || || || || || || | | Sbjct 284 CCATGCAAATCTTTGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCCT 225 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | ||||| || || || ||||| || ||||| || ||||| | Sbjct 224 CGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACC 165 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||| || | || ||| | ||| | || ||||||| Sbjct 164 AGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACA 105 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||||||||||||| | || | || | ||| | || || ||||| Sbjct 104 ACATCCAAAAGGAGTCGACCCTCCACCTCGTCCTCCGTCTCCGTGGCGGCAT 53 >seq544 Length=109881 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || || || || || |||||||| |||| || | ||||| Sbjct 82796 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 82737 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || ||||| || ||||| || |||||| | || | |||||| Sbjct 82736 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 82677 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | || |||| || |||||||| || |||||||||||| | Sbjct 82676 AAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 82617 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | || ||||| ||||| || Sbjct 82616 CACCTCGTCCTCCGCTTGCGCGGTGGTAT 82588 >seq893 Length=83276 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || ||||| || || |||| ||| |||| || | ||||| || || || ||| Sbjct 39087 ATCACCCTTGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 39146 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || ||||| || |||||| | || | |||||||| || | || ||| Sbjct 39147 AAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 39206 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 | ||| | || || |||||||| || |||||||||||| Sbjct 39207 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 39248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912778679680