Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq64 87.8 2e-12 >seq64 Length=12022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 ||||| || | |||||||| || || || || ||||||||||| || | |||||| || Sbjct 6165 GAAAAGGTCAAGCCGGGCATCAGCCCGCGCTTCTTGAGCCAAAAGATGGACGCGAACGAC 6106 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGC 48307 || || || |||||||| || || || || || ||| | |||| || ||| | |||| | Sbjct 6105 CCGGAGAAAAATATGCCCTCGACCGCTGCGAACGCGATGAGTCGTTCGCCGAACACTGCC 6046 Query 48308 TTCG--TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGT 48364 |||| | ||||| || ||||| || || |||||||| | ||||| | ||| Sbjct 6045 TTCGGATCAGAGATCCATCGCAACGCCCAGTCGGCTTTCTTCTTGATGCAAGGGACTGT 5987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659821405760