Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq381 170 4e-37
seq544 156 9e-33
seq893 129 1e-24
seq236 84.2 5e-11
>seq381
Length=90481
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || || || || | || || |||||||||||||| || |
Sbjct 56 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 115
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || ||||||||||| | || || ||||| |||
Sbjct 116 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 175
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | ||||| |||||||| | |||||
Sbjct 176 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 235
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||||||||||||||||| ||||| || || || |||||
Sbjct 236 TCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 282
>seq544
Length=109881
Score = 156 bits (172), Expect = 9e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| |||| ||| || || || || | || || || |||||||||||||| |
Sbjct 82590 ACCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 82649
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| ||||| || || || ||||||||||| | ||| || ||||| ||
Sbjct 82650 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 82709
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| || || ||| | ||||| ||||| || | |||||
Sbjct 82710 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 82769
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||||||||| |||||
Sbjct 82770 CTCGAGGGTGATCGTCTTGCCCGT 82793
>seq893
Length=83276
Score = 129 bits (142), Expect = 1e-24
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||||||||||||| | || |||||||| ||||| || || || |||||||||
Sbjct 39241 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 39182
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | ||| || ||||| || || ||||||||||| |||||||| || || ||| |
Sbjct 39181 ATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 39122
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064
||||| |||||||| | ||||| || || ||||||
Sbjct 39121 TCGATCGTGTCCGACGACTCGACCTCAAGGGTGATC 39086
>seq236
Length=10160
Score = 84.2 bits (92), Expect = 5e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || || || || | || || |||||||||||||| || |
Sbjct 10032 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAG 10091
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || ||||||||||| | || || ||||| |||
Sbjct 10092 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGG 10151
Query 282993 ATACCCTCC 283001
|| ||||||
Sbjct 10152 ATGCCCTCC 10160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046725332668236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |