Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq381 140 2e-28 seq544 104 2e-17 seq893 82.4 5e-11 seq236 82.4 5e-11 >seq381 Length=90481 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||||||||||||||||||| | ||| ||| |||| || Sbjct 74 ACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 133 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||| || | || | || ||||| ||| Sbjct 134 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 193 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | ||| || ||||| | ||| |||||||| Sbjct 194 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTA 253 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| |||||||| || |||||||||||| Sbjct 254 CCCGTCAGGGTCTTGACAAAGATTTGCATG 283 >seq544 Length=109881 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | || ||| |||| || Sbjct 82609 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 82668 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | ||||||||| || | || | || ||||| ||| Sbjct 82669 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 82728 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||||| || || ||||| | || |||||||| Sbjct 82729 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 82788 Query 44309 CCCGTGAGGG 44318 |||||||||| Sbjct 82789 CCCGTGAGGG 82798 >seq893 Length=83276 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 39259 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 39200 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | ||||||||| || | || | || ||||| ||| Sbjct 39199 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 39140 Query 44249 ATCTT 44253 ||||| Sbjct 39139 ATCTT 39135 >seq236 Length=10160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||||||||||||||||||| | ||| ||| |||| || Sbjct 10050 ACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 10109 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||||| ||||||||||| | |||||||| || Sbjct 10110 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTC 10144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985863445978