Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq381 147 2e-30
seq544 114 1e-20
seq893 109 5e-19
seq236 89.7 5e-13
>seq381
Length=90481
Score = 147 bits (162), Expect = 2e-30
Identities = 176/235 (75%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | || || || || || |||||| || ||||| || || ||
Sbjct 55 GCCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCCGA 114
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| ||||||||||||||||| || || |||||||| ||||| | ||
Sbjct 115 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGCGG 174
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || | || || | ||| | | | ||||| ||||| |
Sbjct 175 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 233
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT-GTTAT 41867
|||| | ||| ||||| ||||||||||| ||||| || || || ||||| |||||
Sbjct 234 CCTCGAGCGTGATCGTCTTACCCGTCAGGGTCTTGACAAAGATTTGCATGGTTAT 288
>seq544
Length=109881
Score = 114 bits (126), Expect = 1e-20
Identities = 130/172 (76%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| || || ||||| |||| ||||||||||||||||| ||
Sbjct 82626 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 82685
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|| || ||||| ||||| | ||| | || |||||||||| || | || || | |||
Sbjct 82686 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGT 82744
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841
| | | |||||| |||||| ||||| | || ||||| || ||||| ||
Sbjct 82745 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 82796
>seq893
Length=83276
Score = 109 bits (120), Expect = 5e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||| ||
Sbjct 39242 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 39183
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| || ||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 39182 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 39135
>seq236
Length=10160
Score = 89.7 bits (98), Expect = 5e-13
Identities = 72/86 (84%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||| || ||||| || || ||||||||||| |||| ||||||||||||||||| ||
Sbjct 10067 CTCCTTTTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 10126
Query 41731 TATCAGGCGCTGTTGGTC-CGCGGGA 41755
|| |||||||| ||||| ||||||
Sbjct 10127 GATGAGGCGCTGCTGGTCGGGCGGGA 10152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462298024720800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |