Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq759 239 6e-58 seq1608 100 4e-16 >seq759 Length=2593 Score = 239 bits (264), Expect = 6e-58 Identities = 458/675 (68%), Gaps = 0/675 (0%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 |||||| ||||| || |||| | || | ||| ||| |||| | || || | | | Sbjct 1416 TTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGGGCAGAAGAGAGG 1357 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || || | || | || || ||||| ||||| || || |||||||| || | || Sbjct 1356 CCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGGCGAAGAA 1297 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | ||| | | | | |||||| ||||| ||||||| || |||||||| | | Sbjct 1296 GAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAA 1237 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 ||| || ||||||||||| | ||| || || | | ||||||| || ||||||||||| Sbjct 1236 AATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCC 1177 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | ||| | ||| ||||| || ||||| | | ||| || | ||||| || || Sbjct 1176 TTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGA 1117 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 ||||||||| || | ||| || ||| | |||||||| || ||| || ||||| Sbjct 1116 GTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACC 1057 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 ||||| ||||| | || ||||| | ||||| || | || || ||||| || || Sbjct 1056 GATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTC 997 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || ||| |||| | | || || || ||| | ||| | || |||||| Sbjct 996 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCC 937 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 || || || | ||||||||||||||| || || || ||| || | || ||||| || Sbjct 936 AGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGTTGTAGGT 877 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 | || ||| || ||||| | | ||||| || || ||||||||||| | |||||| Sbjct 876 TTGAAGTGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACGCATGAGCATGTG 817 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||||||| |||| ||| || | ||| | | ||| || ||| | |||||| Sbjct 816 TTGAGGTCGTTCAGCGACTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGAGAGTTTT 757 Query 66641 AAAACCAAAATAGTT 66655 |||||||| ||||| Sbjct 756 GAAACCAAAGTAGTT 742 >seq1608 Length=13696 Score = 100 bits (110), Expect = 4e-16 Identities = 123/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||| || |||||||||||||| || |||||||| || ||||| || || || || || || Sbjct 13558 GGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGA 13499 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 |||||| ||||| ||||| || || || || || || | || | |||||| | | | Sbjct 13498 TCCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAGACTG- 13440 Query 36325 ACTG-TCAT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 | || |||| || |||||||| | ||||| ||||||||||| Sbjct 13439 ATTGTTCATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658149007053280