Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq759 242 5e-59 seq1608 105 9e-18 >seq759 Length=2593 Score = 242 bits (268), Expect = 5e-59 Identities = 538/802 (67%), Gaps = 4/802 (0%) Strand=Plus/Minus Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||||| || || || || || |||||||||| | |||| ||| | || || | | Sbjct 1541 GCATCCTTGTACAGCATGAAAGGGTTACCAGTTTCGACTTGAGCTTCGAGGATTGCGTAC 1482 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATC-TCTTTTCTCTTTCGTATTGTGTATA 71936 || | | |||| || | |||||| | || || || | ||||| | ||| | Sbjct 1481 CAAAGCTTTTGAGCGGGCATCGTCTTCTTGGCGCGTCCTTCCT-TCTCGTACT-TGTTGA 1424 Query 71937 TAATCG-TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACA 71995 | | |||||| ||||| || || | | || | ||| ||| |||| || || | Sbjct 1423 AGAGAGCTTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGGGCAGA 1364 Query 71996 TCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055 | | ||| || |||| || | || || ||||| ||||| || || |||||||| | Sbjct 1363 AGAGAGGCCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGG 1304 Query 72056 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 | | || ||||| | | | | ||||| ||||| ||||||| || ||||||| Sbjct 1303 CGAAGAAGAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGA 1244 Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175 | | | ||| || | ||||||||||| | ||| || || | | |||| || || |||| Sbjct 1243 ATTCGAAAATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGT 1184 Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235 ||||||| ||||| | ||| | ||| ||||| || ||||| | | ||| || | |||| Sbjct 1183 TTCCTCCTTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATAC 1124 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 | || || ||||||||| || | ||| || ||| | |||||||| ||| ||| | Sbjct 1123 CGTTCGAGTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCG 1064 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | ||||| ||||| ||||| | || ||||| | ||||| || | || || |||| Sbjct 1063 AGAGACCGATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGA 1004 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 | || || || || ||| |||| | | || || || ||| | ||| | || Sbjct 1003 TACCTTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAG 944 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 |||||| || || || | ||||||||||||||| || || || ||| |||| || | Sbjct 943 GAGTTCCAGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGT 884 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| || | || ||| || ||||| | | || || || || ||||||||||| | Sbjct 883 TGTAGGTTTGAAGTGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACGCATGA 824 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || ||||||| |||| ||| || || ||| | | ||| || ||| | Sbjct 823 GCATGTGTTGAGGTCGTTCAGCGACTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGA 764 Query 72596 AAGTTTTAAAACCAAAATAGTT 72617 |||||| |||||||| ||||| Sbjct 763 GAGTTTTGAAACCAAAGTAGTT 742 >seq1608 Length=13696 Score = 105 bits (116), Expect = 9e-18 Identities = 124/163 (76%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 ||| || |||||||||||||| || |||||||| || ||||| || || || || || || Sbjct 13558 GGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGA 13499 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 |||||| ||||||||||| || || || || || || | || | |||||| | | | Sbjct 13498 TCCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAGACTG- 13440 Query 42232 ACTG-TCAT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | || |||| || |||||||| | ||||| ||||||||||| Sbjct 13439 ATTGTTCATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671114938317920