Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1827 102 1e-16 >seq1827 Length=8425 Score = 102 bits (112), Expect = 1e-16 Identities = 214/319 (67%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 193830 ACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTG 193889 ||||| | ||| || || || || || | || || || ||||| |||||||| || | Sbjct 2090 ACTCCTCAATCCGAGACTACTCCCTTCTACCCTCGTTCCCCTTACGGTGTAGCGAAACTC 2149 Query 193890 TATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGT 193949 || | || |||||| ||||||| || ||||| || || ||| | |||| ||| Sbjct 2150 TACGCTTTCTGGATCGTCAAGAACTACCGTGAATCCTACGGAATGTACGCCGCCAACGGT 2209 Query 193950 ATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACA 194009 || |||||||| ||||||||||| || | || || || || || || ||||| | Sbjct 2210 ATCCTCTTCAACCACGAATCTCCTCGACGTGGACGAACTTTCGTCACCCGAAAGATCTCT 2269 Query 194010 CAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAAT 194069 | | | | | | ||||| | || ||| || || || || ||||| | | Sbjct 2270 CGTGCTGTCGCCGAAATCTCGCTCGGGCAACAAGAGTGCCTCTACCTCGGTAACTTGGAC 2329 Query 194070 GCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAA 194129 || ||| | |||||||||||||| || || || || | |||||| ||| | ||| Sbjct 2330 GCCAAGCGTGATTGGGGACACGCCCGTGACTACGTCGAGGGTATGTGGCGTATGCTTCAA 2389 Query 194130 CAGGATGAACCCGATGATT 194148 || || || |||||||||| Sbjct 2390 CAAGACGAGCCCGATGATT 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807526006879520