Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq759 257 2e-63 seq1608 111 2e-19 >seq759 Length=2593 Score = 257 bits (284), Expect = 2e-63 Identities = 462/675 (68%), Gaps = 0/675 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| ||||| || |||| | || | ||| ||| |||| | || || | | | Sbjct 1416 TTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGGGCAGAAGAGAGG 1357 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || || | || | || || ||||| ||||| || || |||||||| || | || Sbjct 1356 CCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGGCGAAGAA 1297 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| | | | | |||||| ||||| ||||||| || |||||||| | | Sbjct 1296 GAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAA 1237 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||| || | ||||||||||| | ||| || || | | ||||||| || ||||||||||| Sbjct 1236 AATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCC 1177 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||||| | ||| | ||| ||||| || ||||| | | ||| || | |||||||| || Sbjct 1176 TTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGA 1117 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 ||||||||| || | ||| || ||| | |||||||| || ||| || ||||| Sbjct 1116 GTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACC 1057 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 ||||| ||||| | || ||||| | ||||| || | ||||| |||||||| || Sbjct 1056 GATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTC 997 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || || || |||| | | || || || ||| | ||| | || |||||| Sbjct 996 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCC 937 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || || || | ||||||||||||||| || || || ||| || | || ||||| || Sbjct 936 AGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGTTGTAGGT 877 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 | || ||| || ||||| | | ||||| || || ||||||||||| | |||||| Sbjct 876 TTGAAGTGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACGCATGAGCATGTG 817 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||||||| |||| ||| || | ||| | | ||| || ||| | |||||| Sbjct 816 TTGAGGTCGTTCAGCGACTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGAGAGTTTT 757 Query 63797 AAAACCAAAATAGTT 63811 |||||||| ||||| Sbjct 756 GAAACCAAAGTAGTT 742 >seq1608 Length=13696 Score = 111 bits (122), Expect = 2e-19 Identities = 123/162 (76%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 ||| || |||||||||||||| || |||||||| || ||||| || || |||||||| || Sbjct 13558 GGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGA 13499 Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 |||||| ||||||||||| || || || || || || | || | |||||| | | | Sbjct 13498 TCCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAGACTGA 13439 Query 33471 GCTGTCAT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||| || |||||||| | ||||| ||||||||||| Sbjct 13438 TTGTTCATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622924680458720