Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1295 116 8e-21 seq1427 113 9e-20 seq2116 107 4e-18 seq1267 107 4e-18 seq940 107 4e-18 seq2695 102 2e-16 seq1915 93.3 9e-14 >seq1295 Length=9906 Score = 116 bits (128), Expect = 8e-21 Identities = 137/183 (75%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 ||||| || || || || ||||| || || ||||| |||| ||||| ||||||| || Sbjct 4847 GGACCTAACGGAGCTGGAAAGTCAACTCTCATCAAGCTCCTTACTGGAGAGACCCTTCCC 4906 Query 280239 -ACTGAGG---GGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 ||| || |||| ||||||||||||| |||| | |||||||||||||| || Sbjct 4907 GACTCTGGAAAGGTCGA----GAAGCATCCCAACTTGCGTGTTGCTTACGTCGCTCAACA 4962 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||||||||||||| | ||| |||| | | || | || |||||||| ||||| Sbjct 4963 CGCTTTCCACCACATCGAGCAACACATGGAGAAGTCTGCCGTTCAGTACATTCAATGGCG 5022 Query 280355 CTA 280357 || Sbjct 5023 TTA 5025 >seq1427 Length=3280 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 2561 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 2620 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 2621 CCCACATTGGGC 2632 >seq2116 Length=2644 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||| Sbjct 464 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 523 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 524 CCCACATTGGGC 535 >seq1267 Length=2646 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||| Sbjct 2404 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 2345 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 2344 CCCACATTGGGC 2333 >seq940 Length=6200 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||| Sbjct 839 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 898 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 899 CCCACATTGGGC 910 >seq2695 Length=34933 Score = 102 bits (112), Expect = 2e-16 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 |||||||| || | || |||||||| || |||| |||| || ||||| | || Sbjct 24340 GGACCCAACGGATCCGGAAAGTCTACTCTCGTCAAGCTCCTCGTCGGAGAGACTGAACCC 24399 Query 280239 ACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| || | | |||||||| |||||| || || | ||||||||||| ||| Sbjct 24400 AACAAGGGTGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGATACGTCGCTCAACAC 24459 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 ||||||||||||||||| ||||||| ||| |||||||| |||||||| Sbjct 24460 GCTTTCCACCACATCGATCACCACCTCGACTTGACTCCTCTTCAATACAT 24509 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| || ||||| || || |||||| ||| || |||||||| ||||| || ||| Sbjct 24923 GGTCTCGAACCCGAATTCACCACTCACAACACCATGCGTGGTCTTTCCGGAGGACAAAAG 24982 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | || ||| || ||| |||| || |||||||| || ||||||| || Sbjct 24983 GTCAAGGTCGTTCTCGCTGCCGCTACCTGGCGACGACCTCACGTCGTCATTCTCGATGAA 25042 Query 280800 CCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTT 280859 ||||||||||| ||||||| || || | ||| || | |||| || | || || Sbjct 25043 CCTACCAACTACTTGGACCGAGAATCGCTCGCCGCCCTTATCTCTGCGCTCAAGACCTTC 25102 Query 280860 GGCGGCGGCGTCGTAGTCATTTCTCACA 280887 | || || || | |||||| |||||| Sbjct 25103 GAGGGAGGTGTTCTCGTCATTACTCACA 25130 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 279690 CTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATT 279749 |||||| | ||||| || || || || |||||||||||||| |||||| |||| || || Sbjct 23773 CTGCCA-TCGGTTCCCTTTCCGGAGGATGGAAGATGAAGCTCGCCCTCGCTCGTGCTATC 23831 Query 279750 CTACTGCG-TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAA 279808 || || || |||||| |||| || || ||||| || |||||||| |||| | || Sbjct 23832 CT-CTTCGAAGCCGATATCCTTCTCCTCGATGAACCTACCAACCATTTGGATGTCCTTAA 23890 Query 279809 CGTAGCCTGGCTAGTGTCCTACCT 279832 ||| || ||||| | | |||||| Sbjct 23891 CGTCGCTTGGCTCGAGAACTACCT 23914 >seq1915 Length=7651 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 7593 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 7651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027798714792172