Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1827 150 3e-31 seq2116 105 1e-17 seq1267 105 1e-17 seq940 105 1e-17 seq1427 100 5e-16 seq1481 89.7 9e-13 seq1295 84.2 4e-11 >seq1827 Length=8425 Score = 150 bits (166), Expect = 3e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||||| | ||||| ||||| || || || |||||||| ||||| ||| Sbjct 2388 TGAAGCATACGCCACATACCCTCGACGTAGTCACGGGCGTGTCCCCAATCACGCTTGGCG 2329 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGA 268366 |||| ||| |||||| | ||||| | || | |||||| | || | | | ||| Sbjct 2328 TCCAAGTTACCGAGGTAGAGGCACTCTTGTTGCCCGAGCGAGATTTCGGCGACAGCACGA 2269 Query 268367 GTGATTTTTCGGGTCACGAACGTCTCG-CCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 | ||| |||||||| ||||| || ||| |||||| |||| ||||||||||||||||| Sbjct 2268 GAGATCTTTCGGGTGACGAAAGT-TCGTCCACGTCGAGGAGATTCGTGGTTGAAGAGGAT 2210 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 |||||| ||| |||| || || | |||||||||||| ||| ||||| | || | Sbjct 2209 ACCGTTGGCGGCGTACATTCCGTAGGATTCACGGTAGTTCTTGACGATCCAGAAAGCGTA 2150 Query 268486 CATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGT 268530 | || || || |||| || ||||| || | |||||| || || Sbjct 2149 GAGTTTCGCTACACCGTAAGGGGAACGAGGGTAGAAGGGAGTAGT 2105 >seq2116 Length=2644 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||||||||| | || ||||||| || ||||||||||||||||| Sbjct 463 CGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 522 Query 84515 CCCCACATCGGGC 84527 |||||||| |||| Sbjct 523 CCCCACATTGGGC 535 >seq1267 Length=2646 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||||||||| | || ||||||| || ||||||||||||||||| Sbjct 2405 CGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 2346 Query 84515 CCCCACATCGGGC 84527 |||||||| |||| Sbjct 2345 CCCCACATTGGGC 2333 >seq940 Length=6200 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||||||||| | || ||||||| || ||||||||||||||||| Sbjct 838 CGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 897 Query 84515 CCCCACATCGGGC 84527 |||||||| |||| Sbjct 898 CCCCACATTGGGC 910 >seq1427 Length=3280 Score = 100 bits (110), Expect = 5e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||| Sbjct 2560 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 2619 Query 84515 CCCCACATCGGGC 84527 |||||||| |||| Sbjct 2620 CCCCACATTGGGC 2632 >seq1481 Length=4039 Score = 89.7 bits (98), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 |||||| ||||| || || |||||||||||||||||||| ||||||||| ||||| || Sbjct 4037 TTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGT 3978 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||| | ||||| ||||| | |||||| Sbjct 3977 GTCGGAAGATTCGACTTCAAGGGTGAT 3951 >seq1295 Length=9906 Score = 84.2 bits (92), Expect = 4e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| || |||||||| || | | | |||| ||| | ||| || ||||||||| Sbjct 5025 TAACGCCATTGAATGTACTGAACGGCAGACTTCTCCATGTGTTGCTCGATGTGGTGGAAA 4966 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || || || || ||||| || | |||| ||||||||||||| || || ||||| Sbjct 4965 GCGTGTTGAGCGACGTAAGCAACACGCAAGTTGGGATGCTTCTCGAC-CTTTCCAGAGTC 4907 Query 225098 -GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 || | | ||| || || |||| ||||||||| || | ||| || || || || || || Sbjct 4906 GGGAAGGGTCTCTCCAGTAAGGAGCTTGATGAGAGTTGACTTTCCAGCTCCGTTAGGTCC 4847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589083350240