Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016-
12-23] 2,892 sequences; 16,339,983 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1827 150 3e-31
seq2116 105 1e-17
seq1267 105 1e-17
seq940 105 1e-17
seq1427 100 5e-16
seq1481 89.7 9e-13
seq1295 84.2 4e-11
>seq1827
Length=8425
Score = 150 bits (166), Expect = 3e-31
Identities = 206/285 (72%), Gaps = 2/285 (1%)
Strand=Plus/Minus
Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306
|| ||||| |||||| | ||||| ||||| || || || |||||||| ||||| |||
Sbjct 2388 TGAAGCATACGCCACATACCCTCGACGTAGTCACGGGCGTGTCCCCAATCACGCTTGGCG 2329
Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGA 268366
|||| ||| |||||| | ||||| | || | |||||| | || | | | |||
Sbjct 2328 TCCAAGTTACCGAGGTAGAGGCACTCTTGTTGCCCGAGCGAGATTTCGGCGACAGCACGA 2269
Query 268367 GTGATTTTTCGGGTCACGAACGTCTCG-CCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425
| ||| |||||||| ||||| || ||| |||||| |||| |||||||||||||||||
Sbjct 2268 GAGATCTTTCGGGTGACGAAAGT-TCGTCCACGTCGAGGAGATTCGTGGTTGAAGAGGAT 2210
Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485
|||||| ||| |||| || || | |||||||||||| ||| ||||| | || |
Sbjct 2209 ACCGTTGGCGGCGTACATTCCGTAGGATTCACGGTAGTTCTTGACGATCCAGAAAGCGTA 2150
Query 268486 CATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGT 268530
| || || || |||| || ||||| || | |||||| || ||
Sbjct 2149 GAGTTTCGCTACACCGTAAGGGGAACGAGGGTAGAAGGGAGTAGT 2105
>seq2116
Length=2644
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514
|||||||||||||||||||||||||| | || ||||||| || |||||||||||||||||
Sbjct 463 CGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 522
Query 84515 CCCCACATCGGGC 84527
|||||||| ||||
Sbjct 523 CCCCACATTGGGC 535
>seq1267
Length=2646
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514
|||||||||||||||||||||||||| | || ||||||| || |||||||||||||||||
Sbjct 2405 CGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 2346
Query 84515 CCCCACATCGGGC 84527
|||||||| ||||
Sbjct 2345 CCCCACATTGGGC 2333
>seq940
Length=6200
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514
|||||||||||||||||||||||||| | || ||||||| || |||||||||||||||||
Sbjct 838 CGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 897
Query 84515 CCCCACATCGGGC 84527
|||||||| ||||
Sbjct 898 CCCCACATTGGGC 910
>seq1427
Length=3280
Score = 100 bits (110), Expect = 5e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514
|||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||
Sbjct 2560 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 2619
Query 84515 CCCCACATCGGGC 84527
|||||||| ||||
Sbjct 2620 CCCCACATTGGGC 2632
>seq1481
Length=4039
Score = 89.7 bits (98), Expect = 9e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398
|||||| ||||| || || |||||||||||||||||||| ||||||||| ||||| ||
Sbjct 4037 TTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGT 3978
Query 68399 GTCTGCTGATTCTACTTCCAAGGTGAT 68425
||| | ||||| ||||| | ||||||
Sbjct 3977 GTCGGAAGATTCGACTTCAAGGGTGAT 3951
>seq1295
Length=9906
Score = 84.2 bits (92), Expect = 4e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| ||||| || |||||||| || | | | |||| ||| | ||| || |||||||||
Sbjct 5025 TAACGCCATTGAATGTACTGAACGGCAGACTTCTCCATGTGTTGCTCGATGTGGTGGAAA 4966
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| || || || ||||| || | |||| ||||||||||||| || || |||||
Sbjct 4965 GCGTGTTGAGCGACGTAAGCAACACGCAAGTTGGGATGCTTCTCGAC-CTTTCCAGAGTC 4907
Query 225098 -GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156
|| | | ||| || || |||| ||||||||| || | ||| || || || || || ||
Sbjct 4906 GGGAAGGGTCTCTCCAGTAAGGAGCTTGATGAGAGTTGACTTTCCAGCTCCGTTAGGTCC 4847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921589083350240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |