Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1827 122 1e-22 seq1331 84.2 3e-11 >seq1827 Length=8425 Score = 122 bits (134), Expect = 1e-22 Identities = 253/374 (68%), Gaps = 2/374 (1%) Strand=Plus/Plus Query 22451 AGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAAAATACAC 22510 |||| ||||| || || || ||||| || || ||||||||| ||| || | ||| | Sbjct 2052 AGGCCTCTACTTCGGAACTTTACGGAAAGGTGGTTGAAACTCCTCAATCCGAGACTACTC 2111 Query 22511 CGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGG-CGACAGTT 22569 | || ||||| ||||| || || || ||||| ||| | | | ||| || || Sbjct 2112 CCTTCTACCCTCGTTCCCCTTACGGTGTAGCGAAACTCTACGCTTTCTGGATCGTCAAG- 2170 Query 22570 AATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCACGAATCA 22629 || || | ||||| ||||| |||| || ||| ||||| | |||||||||||||| Sbjct 2171 AACTACCGTGAATCCTACGGAATGTACGCCGCCAACGGTATCCTCTTCAACCACGAATCT 2230 Query 22630 CCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATATCAGT 22689 || |||| || || ||||| || ||||| || | | | |||||| | ||| Sbjct 2231 CCTCGACGTGGACGAACTTTCGTCACCCGAAAGATCTCTCGTGCTGTCGCCGAAATCTCG 2290 Query 22690 GCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCAT 22749 || ||||| | || | ||||| |||||| | || || || || |||||||| || Sbjct 2291 CTCGGGCAACAAGAGTGCCTCTACCTCGGTAACTTGGACGCCAAGCGTGATTGGGGACAC 2350 Query 22750 GCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTT 22809 || || || ||||| | |||||||| || | |||||||| | || || ||||| Sbjct 2351 GCCCGTGACTACGTCGAGGGTATGTGGCGTATGCTTCAACAAGACGAGCCCGATGATTTC 2410 Query 22810 GTTATTGCAACAGG 22823 ||| | || || || Sbjct 2411 GTTCTCGCCACTGG 2424 >seq1331 Length=11049 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/260 (68%), Gaps = 13/260 (5%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || || | ||| || || || ||||||| || || |||| ||| Sbjct 4274 TCGAAATCTTCTCCTCCGAGGTGAGTGTCACCAGCGGTCGAAAGAACCTCGAAGACACCG 4215 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA---AAAATGA-- 7571 | || || | | ||| ||||| || || || || || || ||| | ||||| Sbjct 4214 TCGTCGATAGAGAGAAGCGAGACATCGAATGTTCCTCCTCCGAGATCATAGACAATGATG 4155 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 |||||||| || || |||| ||||| ||||| |||||||| || || || | Sbjct 4154 GTACGTTC---TC-----CTCCAGTCTTGTCGAGTCCGTAGGCGATAGCGGCGGCGGTAG 4103 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 |||| || | | ||| || ||| || ||||| || || | ||||| || || |||| Sbjct 4102 GTTCGTTGACGACACGGAGGACGTTGAGACCAGCGATCGTACCGGCATCCTTGGTAGCTT 4043 Query 7692 GTCGTTGCGAATCGTTAAAG 7711 | ||||| | ||||| ||| Sbjct 4042 GACGTTGAGCGTCGTTGAAG 4023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635109839949280