Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq759 156 5e-33 seq315 113 6e-20 seq1608 95.1 2e-14 >seq759 Length=2593 Score = 156 bits (172), Expect = 5e-33 Identities = 473/728 (65%), Gaps = 11/728 (2%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| ||||| | ||||| || || ||||| ||| | | | | Sbjct 818 ACATGCTCATGCGTGTCGCTGTTGGTATTCACGGAAGCGATATCGATCGAGCACTTCAAA 877 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 | ||| || |||||| | |||| |||||| | || |||||||||||||||| Sbjct 878 CCTACAACCTCATGTCCGAACGATACTTCACCCACGCTTCTCCTACCCTCTTCAACGCTG 937 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798 | || || || ||| | || ||| ||||| | | | ||||| || || ||| Sbjct 938 GAACTCCTCACCCTCAACTCTCTTCTTGCTTCCTCGTCACGATGAAGGACGACTCGATCG 997 Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858 | || || |||| ||| |||| || |||| ||||||||| || || || |||| Sbjct 998 AAGGTATCTACGACACCCTCAAGACTTGCGCCCTCATCTCAAAGACTGCAGGAGGAATCG 1057 Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAAT 111918 | | || || | | | || | ||| || || || |||||| | | Sbjct 1058 GTCTCTCGATTCACAACATTCGTGCGACTGGTTCTTACATCGCTGGAACCAATGGTTACT 1117 Query 111919 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAG 111978 | | ||||| | || |||||||| || | ||| ||| || || || || | |||| Sbjct 1118 CGAACGGTATCGTCCCTATGCTTCGTGTTTACAACAACACTGCTCGTTACGTCGATCAAG 1177 Query 111979 CTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 112032 || ||||| ||| || ||||| |||| ||||| || |||||||| || | Sbjct 1178 GAGGAAACAAGCGTCCT---GGAGCTTTCGCAATCTACCTTGAACCGTGGCACGCCGACA 1234 Query 112033 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGAT 112091 | | || ||||| || | || || || || | ||||| | || ||| || ||| Sbjct 1235 TTTTCGAATTCCTCGACCTCCGAAAGAATCACGGAAAGGAGGAAGTTCG-TGCTCGTGAT 1293 Query 112092 CTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT 112151 ||||||| ||| || ||||| || || |||||||||||| | || || |||| ||| | Sbjct 1294 CTCTTCTTCGCCCTTTGGATCCCCGACCTCTTCATGAAGCGTGTCGAAGAGAATGGTGAC 1353 Query 112152 TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTT 112211 ||| ||||||| || || | | || ||||| || ||| | || || || || Sbjct 1354 TGGCCTCTCTTCTGCCCTGCTGAAGCTCCCGGACTTCACGAGGTTTACGGCGACGAATTC 1413 Query 112212 GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCC 112271 ||||| |||| || ||||||||| | ||| | || || | |||| |||| ||| Sbjct 1414 GAAGCTCTCTTCAACAAGTACGAGAAGGAAGGACGCGCCAAGAAGACGATGCCCGCTCAA 1473 Query 112272 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331 | | ||| | || || ||| | ||||| ||| ||||||| || | ||||| ||| Sbjct 1474 AAGCTTTGGTACGCAATCCTCGAAGCTCAAGTCGAAACTGGTAACCCTTTCATGCTGTAC 1533 Query 112332 AAAGACGC 112339 || || || Sbjct 1534 AAGGATGC 1541 >seq315 Length=7320 Score = 113 bits (124), Expect = 6e-20 Identities = 210/298 (70%), Gaps = 14/298 (5%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCGAAGC---TCGGAAACATCTTGATAGTCCTT 176820 ||| | ||||||||| |||| ||| || || ||| |||| ||| ||||| |||| Sbjct 5575 ATCTGCCATGATCATCAGACTACCGTATCGTAGCGAGTCGGTGT--TCT-GATAGACCTT 5631 Query 176821 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTG-GTTT--GATGTGAG 176877 || ||||| | ||||| ||||| |||| | | ||||| | | |||| || || Sbjct 5632 GCCTTGTTGTAAACCCATGATCTGTTTGATAGC-TTGAATTTCGGCGTTTTCGAGCAAAG 5690 Query 176878 CTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTA 176937 || | ||| || || ||||| || | || ||||||||||||||||| || || Sbjct 5691 CTTTTC--CAGTCGCTTCTCGAACGTTGAGCAATTTTCCACGAAGAGGGAAGACTCCATA 5748 Query 176938 GTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTC 176997 || ||||| || || || |||||||| | || ||||| | ||||||||| || || || Sbjct 5749 GTTGTCGCGTCCGACAACTGAGAGACCGGATACGGCGAGAGCTTTCGCAGAGTCTCCTTC 5808 Query 176998 TGTCACGATGAGTGTACACTTGCCA-GATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 |||| |||||| ||||| |||| | ||| | ||| || || ||||| || || || Sbjct 5809 GGTCAAGATGAGGGTACATTTGCTACCATTCT-TCGTTCCTGCATTGTTGGCGTCTTC 5865 >seq1608 Length=13696 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGT 102165 ||||||| || ||| ||||| || || ||||| | |||||| | ||| | | | Sbjct 13380 CAGTTCCCTGCATTGCCAAGAAGGCCGACTGGGCACTCAAGTGGATCAACGATGAACAAT 13439 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | || ||||| || || ||| |||| || || ||||||||| ||||||||||||| Sbjct 13440 CA-GT--CTTTGGAGAACGTCTCGTCGCTTTCGCCGCTGTTGAGGGAATCTTCTTCTCTG 13496 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | || ||| | || | |||||||||||||| ||||||||||| || ||| ||||| Sbjct 13497 GATCTTTCGCTTCAATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCT 13556 Query 102286 CC 102287 || Sbjct 13557 CC 13558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719960162240