Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq759 129 7e-25 >seq759 Length=2593 Score = 129 bits (142), Expect = 7e-25 Identities = 382/589 (65%), Gaps = 0/589 (0%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | || || |||||||| || | || | ||| | || | | ||| || | Sbjct 1330 TCATGAAGAGGTCGGGGATCCAAAGGGCGAAGAAGAGATCACGAGCACGAACTTCCTCCT 1271 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || |||| || || || || || || | || || || ||||| ||||| | | Sbjct 1270 TTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAAAATGTCGGCGTGCCACGGTTCAAGGT 1211 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | ||||| | | || || || || || ||||||||||| | || | ||||| |||| Sbjct 1210 AGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCCTTGATCGACGTAACGAGCAGTGTTGT 1151 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | ||||| | | ||| ||||| ||||| || || |||||||||||| | || ||| Sbjct 1150 TGTAAACACGAAGCATAGGGACGATACCGTTCGAGTAACCATTGGTTCCAGCGATGTAAG 1091 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 ||| | || | || || ||| || | ||| || || ||||| | || || || | Sbjct 1090 AACCAGTCGCACGAATGTTGTGAATCGAGAGACCGATTCCTCCTGCAGTCTTTGAGATGA 1031 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 | || || || ||||| || || || ||||| || || || |||| | | | Sbjct 1030 GGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTCGATCGAGTCGTCCTTCATCGTGACGA 971 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | || ||| ||| | ||| || ||| |||||| | || || | || ||||| || | Sbjct 970 GGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCCAGCGTTGAAGAGGGTAGGAGAAGCGT 911 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | | || || || || | | || || |||| || | ||| ||||| | | Sbjct 910 GGGTGAAGTATCGTTCGGACATGAGGTTGTAGGTTTGAAGTGCTCGATCGATATCGCTTC 851 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 || ||||| | || |||||||| | ||| | |||||||| |||| | | | || || Sbjct 850 CGTGAATACCAACAGCGACACGCATGAGCATGTGTTGAGGTCGTTCAGCGACTCTGCCAT 791 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799 ||| | || || || ||| | ||||| |||||||| ||||| Sbjct 790 CGATTCGGAGGAGGTAAGAACGTTCGAGAGTTTTGAAACCAAAGTAGTT 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562088479766880