Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1331 123 3e-23 seq1481 93.3 6e-14 >seq1331 Length=11049 Score = 123 bits (136), Expect = 3e-23 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 195355 TCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACG----TTG 195410 |||||| || || ||| | || |||||||||||||||| ||||| || |||| || Sbjct 3573 TCGTGTTGAAATCATCGCCAACGACCAAGGAAACCGTATCACTCCCTCTTACGCCGGTTT 3632 Query 195411 CCTTTACAGATAA--TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAA 195468 ||| | ||| ||| ||| |||| |||||||||||||| ||||| || || || Sbjct 3633 CCTCGAAGGATCCGGTGAGCGTGTCGTCGGAGATGCCGCAAAGAATCAAGCACCTTCAAA 3692 Query 195469 CCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAA 195528 ||||| ||| ||| |||| ||||| |||||||| || ||||| || ||| ||| ||| | Sbjct 3693 CCCTACCAACACTATCTTCGACGCCAAGCGTCTCATCGGTCGTAAATTTGAGGACAAGGA 3752 Query 195529 AGTCCAAGACGATATAAAGGACT 195551 ||| ||| || || ||| ||| Sbjct 3753 AGTTCAACGAGACATGAAGCACT 3775 Score = 93.3 bits (102), Expect = 6e-14 Identities = 177/256 (69%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| || | ||||| || || || ||||| || | | | || || ||||| ||| Sbjct 4023 CTTCAACGACGCTCAACGTCAAGCTACCAAGGATGCCGGTACGATCGCTGGTCTCAACGT 4082 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACA- 195851 || | | |||| ||||| || || || || || || || || || ||||||| Sbjct 4083 CCTCCGTGTCGTCAACGAACCTACCGCCGCCGCTATCGCCTACGGACTCGACAAGACTGG 4142 Query 195852 AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCAC 195911 |||| ||| || | |||| ||| ||||||||| || || || || |||||||| | Sbjct 4143 AGGA-GAACGTACCATC--ATTG-TCTATGATCTCGGAGGAGGAACATTCGATGTCTCGC 4198 Query 195912 TTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAG 195971 ||||| ||| || | ||| | ||||| || | || |||||||| ||||| || | Sbjct 4199 TTCTCTCTATCGACGACGGTGTCTTCGAGGTTCTTTCGACCGCTGGTGACACTCACCTCG 4258 Query 195972 GTGGTGAAGATTTCGA 195987 | || ||||||||||| Sbjct 4259 GAGGAGAAGATTTCGA 4274 >seq1481 Length=4039 Score = 93.3 bits (102), Expect = 6e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||| || || || || || ||||| ||||| ||| |||| |||||||||||||| Sbjct 3951 ATCACCCTTGAAGTCGAATCTTCCGACACGATCGACAACGTCAAGGCCAAGATTCAAGAC 4010 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACG 171986 |||||||| || || |||||||| ||||| Sbjct 4011 AAGGAAGGAATCCCTCCCGATCAACAACG 4039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657838618274240