Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq759 111 5e-19 seq315 87.8 5e-12 >seq759 Length=2593 Score = 111 bits (122), Expect = 5e-19 Identities = 354/539 (66%), Gaps = 15/539 (3%) Strand=Plus/Minus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | ||||||||||| || || || | |||||| ||| || | || || Sbjct 1277 TCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAAAATGTCGGCGTGCCACGGT 1218 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || || || || || ||| ||| | |||| || || ||||| || || |||||| Sbjct 1217 TCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCCTTGATCGACGTAACGAGCA 1158 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCG 156145 || || ||| | |||| |||||||| | ||||| || || ||||||||||| ||| Sbjct 1157 GTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGAGTAACCATTGGTTCCAGCG 1098 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 | | | ||||||| | |||| || ||||| || || || || |||| || Sbjct 1097 A-TGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACCGATTCCTCCTGCAGTCTT 1039 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || | ||||| ||| | || | | | |||||||| || || || || | ||| Sbjct 1038 TGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTCGATCGAGTCGTCCTTCAT 979 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | | || |||| ||| | |||||| | || |||||||||||||| || ||||| Sbjct 978 CGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCCAGCGTTGAAGAGGGTAGG 919 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAA- 156384 | || || | || || | ||||| | ||| || || | | ||| | Sbjct 918 AGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGTTGTAGGT----TTGAAGTGCTCGAT 863 Query 156385 -GAT-TAG-ACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTA 156441 ||| | | |||||||||| | || ||| | ||| ||| || ||||| || || Sbjct 862 CGATATCGCTTCCGTGAATACCAACAGCGACACGCATGAGCATGTGTTGAGGTCGTTCAG 803 Query 156442 CAATCACT-CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | | | || ||||| ||||| || ||||| | ||||| |||||||| || || || || Sbjct 802 CGA-CTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGAGAGTTTTGAAACCAAAGTA 745 >seq315 Length=7320 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 60185 AGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAA 60244 ||||| ||||| ||||| || ||||| | || | || | |||||| || |||||| Sbjct 4484 AGACGAGTTCCGAATTGACCATTTGGATCCAAAACGTTCACGTTGTTGCTTCCAACGAAA 4543 Query 60245 TTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAA 60304 | |||||||||||| | || | ||| | | | || ||||||||||| ||| | ||| Sbjct 4544 TCTTGAGCGAGACCGATGATCGTACCTTGGAGAGAAGCATCACCGTGATGGTATGCGGAA 4603 Query 60305 TGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 ||||| ||||| ||||| | |||| |||| | ||| Sbjct 4604 TGTTCAGAAACGTATCCCGAAAGTTGTCCGACCTGAAT 4641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471763063638604