Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq759 105 1e-16 seq1608 91.5 2e-12 >seq759 Length=2593 Score = 105 bits (116), Expect = 1e-16 Identities = 226/342 (66%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 2071641 GTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGAT 2071700 |||| | || ||||||| ||||||| | || ||| || |||| || || || ||| Sbjct 1548 GTTGGCAGCATCCTTGTACAGCATGAAAGGGTTACCAGTTTCGACTTGAGCTTCGAGGAT 1489 Query 2071701 GGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNNNN 2071760 || |||||| | | ||||||| || || | ||||| || | Sbjct 1488 TGCGTACCAAAGCTTTTGAGCGGGCATCGTCTTCTTGGCGCGTCCTTCCTTCTCGTACTT 1429 Query 2071761 NNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGG 2071820 |||| || || || || |||||| |||||| || ||||| || || | || Sbjct 1428 GTTGAAGAGAGCTTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGG 1369 Query 2071821 GCAAAAGAGCGACCAGTCGCCG--CCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878 ||| ||||| | |||||| || | || ||||| | || || |||||| || Sbjct 1368 GCAGAAGAGAGGCCAGTCACCATTCTCTTCGACACGCTTC--ATGAAGAGGTCGGGGATC 1311 Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938 || ||| || | |||||||| || || || |||||||| ||||| |||||| ||| Sbjct 1310 CAAAGGGCGAAGAAGAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGG 1251 Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 ||||| | |||| | ||||||||||||||| || |||||| Sbjct 1250 TCGAGGAATTCGAAAATGTCGGCGTGCCACGGTTCAAGGTAG 1209 Score = 104 bits (114), Expect = 4e-16 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||| || || || |||| ||| | || || ||||| || || | ||||| || Sbjct 1175 TGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGAG 1116 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | || ||||| || || | ||| | || | || || | ||||| | | ||| Sbjct 1115 TAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACCG 1056 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || | ||| |||||||| ||||| | || || || |||||||| || ||| Sbjct 1055 ATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTCG 996 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| ||||||| | || ||||| || ||| ||| ||| | | || || Sbjct 995 ATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCCA 936 Query 2073781 GCATTGAAGAGCGTGGG 2073797 || |||||||| || || Sbjct 935 GCGTTGAAGAGGGTAGG 919 >seq1608 Length=13696 Score = 91.5 bits (100), Expect = 2e-12 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| ||||||||||| || |||||||||||||| ||||| | | |||| || ||||| Sbjct 13549 GAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGATCCAGAGAA 13490 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 ||||| ||||| || ||||| || ||||||| || || |||| | | || Sbjct 13489 GAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAA---GACTGATTGTTC 13433 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTT 794531 | |||||||||||| | ||||| || ||||| || Sbjct 13432 ATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915938764769588