Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq315 89.7 4e-12 >seq315 Length=7320 Score = 89.7 bits (98), Expect = 4e-12 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 400268 ACAAAGCAGGAACCAAAGAAGGATAT-AAATGTACCCTAATTTTGACAGAGGGAGATTCA 400326 |||| |||||||| || ||| | || ||||||||||| || ||||| || ||||| || Sbjct 5855 ACAATGCAGGAACGAA-GAATGGTAGCAAATGTACCCTCATCTTGACCGAAGGAGACTCT 5797 Query 400327 GCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGATTATTATGGAGTTTTC 400386 || ||| | |||| | || || || ||| | ||| | || | |||||||| ||| Sbjct 5796 GCGAAAGCTCTCGCCGTATCCGGTCTCTCAGTTGTCGGACGCGACAACTATGGAGTCTTC 5737 Query 400387 CCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGC-CGATAA 400445 || ||| | |||||| | | || ||| | || || | | |||| |||| ||| || Sbjct 5736 CCTCTTCGTGGAAAATTGCTCAACGTTCGAGAAGCGACT-GGAAAAGCTTTGCTCGAAAA 5678 Query 400446 TGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTATGATGA 400505 | |||||| ||| |||||| | || | || | ||||||| || || ||| | | Sbjct 5677 CGCCGAAATTCAAGCTATCAAACAGATCATGGGTTTACAACAAGGCAAGGTCTATCAGAA 5618 Query 400506 TCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAG 400552 | | ||||||| |||||| | ||||| | || ||||||| Sbjct 5617 CACCGACTCGCTACGATACGGTAGTCTGATGATCATGGCAGATCAAG 5571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740488415021592