Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq759 221 2e-52 seq1608 107 3e-18 seq174 91.5 2e-13 >seq759 Length=2593 Score = 221 bits (244), Expect = 2e-52 Identities = 454/675 (67%), Gaps = 0/675 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||||||||| || || |||| || | | ||| ||| |||| || || | | | Sbjct 1416 TTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGGGCAGAAGAGAGG 1357 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| || ||| || | || || ||||| || || ||||| |||||||| || | || Sbjct 1356 CCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGGCGAAGAA 1297 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||| | | | | ||| || ||||| ||| ||| || ||||| || || | Sbjct 1296 GAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAA 1237 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 ||| || | ||||| ||||| || || || || | |||| || || || |||||||| Sbjct 1236 AATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCC 1177 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||||| | ||| | |||||||| || || || | ||||| || | ||||| || || Sbjct 1176 TTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGA 1117 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | |||||| ||||||| || ||| || | || ||||| || ||| || ||||| Sbjct 1116 GTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACC 1057 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 ||||||||||| | || ||||| || || ||| || | ||||| || ||||| || Sbjct 1056 GATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTC 997 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || || || |||| | | || || || ||| | |||| | || |||||| Sbjct 996 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCC 937 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 || || || | |||||||| ||||| ||||| || ||| || | || ||||| || Sbjct 936 AGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGTTGTAGGT 877 Query 70056 TTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 || || ||| || ||||| | ||||| || | ||||||||||| | ||| || Sbjct 876 TTGAAGTGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACGCATGAGCATGTG 817 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||||||||||| | | | || ||| | ||||| || ||| |||||||| Sbjct 816 TTGAGGTCGTTCAGCGACTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGAGAGTTTT 757 Query 70176 AAACCCAAAATAGTT 70190 || ||||| ||||| Sbjct 756 GAAACCAAAGTAGTT 742 >seq1608 Length=13696 Score = 107 bits (118), Expect = 3e-18 Identities = 123/162 (76%), Gaps = 5/162 (3%) Strand=Plus/Minus Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || || |||||||| ||||| ||||||||||| |||||||| || || | ||| |||||| Sbjct 13557 GAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGAT 13498 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-AC---T 39780 ||||| |||||||| || || || || || || || || || | ||||| | || | Sbjct 13497 CCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAGACTGAT 13438 Query 39781 TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTT 39822 ||| |||| | |||||||| ||||||| || || ||||| Sbjct 13437 TGT-TCATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397 >seq174 Length=3683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || ||||| ||||||||||| || || || | | ||| || || |||| || || || Sbjct 362 ATTTGAAACCCGTAAAAACACCTCGCCTCGGCACATTGCACTTCGGAACTGAACCTCTCG 421 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 ||||||| ||||| || || |||||||| || ||||| |||||||| || || || Sbjct 422 ACCAAATTCTCATTGACAATGCCATCACTCGCCGCAAAGAATGCCAACACGTGCGAAACG 481 Query 40058 AAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGATATCTTTTGATATATC 40113 |||| | ||||| | || | || | |||||||| |||||||| || ||||| Sbjct 482 AAATGTCGTTCATTCGAAGTGAGGCGTTGAGTCCAGTCAAACATATCTTTCGAGATATC 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686883968246880