Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq759 208 9e-49 seq1608 84.2 3e-11 >seq759 Length=2593 Score = 208 bits (230), Expect = 9e-49 Identities = 493/739 (67%), Gaps = 17/739 (2%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| |||||| | || | || || || ||| | | ||| || || | | Sbjct 1541 GCATCCTTGTACAGCATGAAAGGGTTACCAGTTTCGACTTGAGCTTCGAGGATTGCGTAC 1482 Query 118890 CAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 || | | ||| |||| || ||||| || || || | ||||||||| || || Sbjct 1481 CAAAGCTTTTGAGCGGGCATCGTCTTCTTGGCGCGTCCTTCCTTCTCGTACTTGTTGAAG 1422 Query 118950 AGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || ||||| || || || || |||| ||| || || || || | | | |||||||| Sbjct 1421 AGAGCTTCGAATTCGTCGCCGTAAACCTCGTGA-AGTCCGGGAGCTTCAGCAGGGCAGAA 1363 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||||| ||| | |||| ||| || || ||||||||||||||||| |||||||| || || Sbjct 1362 GAGAGGCCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGGC 1303 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||||||||| ||| ||| |||| || | || ||||| || | || | || Sbjct 1302 GAAGAAGAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAA 1243 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 119185 || | || || |||||||||||||| ||||| | |||| | || | |||| Sbjct 1242 TTCGAAAATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCC---AGGACGCTT 1186 Query 119186 ---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 || | || | || || | |||||| ||| | ||||||||||| || | ||| Sbjct 1185 GTTTCCTCCTTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGAT 1126 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| | || | ||||| || || || ||| | | || | | | ||| || Sbjct 1125 ACCGTTCGAGTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAAT 1066 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 | ||| || || ||||| ||||||||| | ||||| | |||| || |||| Sbjct 1065 CGAGAGACCGATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTA 1006 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| || ||||||||||| |||| | | || ||||||||| || | |||||| Sbjct 1005 GATACCTTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTG 946 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTT 119482 || || |||||||||||||| || || | |||||| |||| | || |||||| Sbjct 945 AGGAGTTCCAGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAG 886 Query 119483 GTCGTAGGTCTCCAAGACGGCGGGA---ATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 || |||||| | ||| || || || || ||||||||||| | | ||| || Sbjct 885 GTTGTAGGT-TTGAAG--TGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACG 829 Query 119540 CATAAACATGTATTGGGGT 119558 ||| | ||||| ||| ||| Sbjct 828 CATGAGCATGTGTTGAGGT 810 >seq1608 Length=13696 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 130061 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 130120 |||||| || || ||||||||||| |||||||| | |||||| || | | || || Sbjct 13557 GAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGAT 13498 Query 130121 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 |||||||||||||| ||||| ||| ||||| || | |||||| || ||||| Sbjct 13497 CCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAG 13444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618412843567520