Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq759 214 2e-50 seq1608 93.3 5e-14 >seq759 Length=2593 Score = 214 bits (236), Expect = 2e-50 Identities = 383/554 (69%), Gaps = 14/554 (3%) Strand=Plus/Minus Query 79342 GGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATC 79401 ||||| | || ||||||| | | || || || || |||||||||||| |||||| Sbjct 1370 GGGCAGAAGAGAGGCCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATC 1311 Query 79402 CACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGC 79461 || ||||| |||||| || || ||| | ||||| | || || ||| || || Sbjct 1310 CAAAGGGCGAAGAAGAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGG 1251 Query 79462 TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTG 79521 ||||| || || | ||||||||||||||||| || || ||||| ||||| | || Sbjct 1250 TCGAGGAATTCGAAAATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGA 1191 Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 |||||| || || || | |||||| || || ||||||||| |||| || ||||| || Sbjct 1190 CGCTTGTTTCCTCCTTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGG 1131 Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641 ||||| |||| | | || || || || ||| | ||| |||| |||||||| Sbjct 1130 ACGATACCGTTCGAGTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTT- 1072 Query 79642 GAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGT 79700 | | | | || ||||| || || | ||| |||||| | ||||| |||||| || Sbjct 1071 GTGAATCGAGAGACCGATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGT 1012 Query 79701 CTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTG 79760 |||||||| || |||||||||||||||||||| | ||| |||||||| || | || Sbjct 1011 GTCGTAGATACCTTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTG 952 Query 79761 TGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820 |||| || || |||||||||||||| || | ||||| |||||| | || | Sbjct 951 AGGGTGAGGAGTTCCAGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGA 892 Query 79821 CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCG---TCG---CCGTGGATGCCGAC 79874 ||| || | ||| || |||| | || || ||| ||| ||||| || || || Sbjct 891 CATGAGGTTGTAGGT----TTGAAGTGCTCGA--TCGATATCGCTTCCGTGAATACCAAC 838 Query 79875 CGCGACGCGCATGA 79888 ||||| ||||||| Sbjct 837 AGCGACACGCATGA 824 Score = 154 bits (170), Expect = 2e-32 Identities = 396/598 (66%), Gaps = 4/598 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||| || | ||||||| ||||| || || || || || ||| || |||| Sbjct 811 CCTCAACACATGCTCATGCGTGTCGCTGTTGGTATTCACGGAAGCGATATCGATCGAGCA 870 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 | | || ||| |||| ||| | | | |||||| ||||| | || ||||| ||| Sbjct 871 CTTCAAACCTACAACCTCATGTCCGAACGATACTTCACCCACGCTTCTCCTACCCTCTTC 930 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||| || || |||| || | || || ||||| || | |||||||| ||| Sbjct 931 AACGCTGGAACTCCTCACCCTCAACTCTCTTCTTGCTTCCTCGTCACGATGAAGGACGAC 990 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || || || |||||||| || |||||| ||||| | |||||| ||| | || Sbjct 991 TCGATCGAAGGTATCTACGACACCCTCAAGACTTGCGCCCTCATCTCAAAGACTGCAGGA 1050 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || | | | | || || || ||| |||| | ||| ||| || || Sbjct 1051 GGAATCGGTCTCTCGATTCAC-AACATTCGTGCGACTGGTTCTTACATCGCTGGAACCAA 1109 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 || || ||| |||||||||||| ||||| || || | ||||||||| || | |||| Sbjct 1110 TGGT-TACTCGAACGGTATCGTCCCTATGCTTCGTGTTTACAACAACACTGCTCGTTACG 1168 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || | || || || ||| || || | ||||| |||||||| || || ||||||| Sbjct 1169 TCGATCAAGGAGGAAACAAGCGTCCTGGAGCTTTCGCAATCTACCTTGAACCGTGGCACG 1228 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| | | || |||||||| || || ||| || || | ||||| | || || Sbjct 1229 CCGACATTTTCGAATTCCTCGACCTCCGAAAGAATCACGGAAAGGAGGAAGTTCGTGCTC 1288 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 | || |||||| ||| | ||||| || ||||| |||||| || || || || | | Sbjct 1289 GTGATCTCTTCTTCGCCCTTTGGATCCCCGACCTCTTCATGAAGCGTGTCGAAGAGAATG 1348 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 || |||| || | ||||| ||| || || || | ||| || |||||||| Sbjct 1349 GTGACTGGCCTCTCTTCTGCCCTGCTGAAGCTCCCGGACTTCACGAGGTTTACGGCGA 1406 >seq1608 Length=13696 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 59973 tttGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||| | |||||||| | ||||| || || || ||||||||||||||||| || ||| Sbjct 13445 TTTGGAGAACGTCTCGTCGCTTTCGCCGCTGTTGAGGGAATCTTCTTCTCTGGATCTTTC 13504 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086 | | || ||||||||||| |||||||| |||||||| || || | |||||| Sbjct 13505 GCTTCAATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCC 13558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548504970828480