Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016-
12-23] 2,892 sequences; 16,339,983 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq759 214 2e-50
seq1608 93.3 5e-14
>seq759
Length=2593
Score = 214 bits (236), Expect = 2e-50
Identities = 383/554 (69%), Gaps = 14/554 (3%)
Strand=Plus/Minus
Query 79342 GGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATC 79401
||||| | || ||||||| | | || || || || |||||||||||| ||||||
Sbjct 1370 GGGCAGAAGAGAGGCCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATC 1311
Query 79402 CACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGC 79461
|| ||||| |||||| || || ||| | ||||| | || || ||| || ||
Sbjct 1310 CAAAGGGCGAAGAAGAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGG 1251
Query 79462 TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTG 79521
||||| || || | ||||||||||||||||| || || ||||| ||||| | ||
Sbjct 1250 TCGAGGAATTCGAAAATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGA 1191
Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581
|||||| || || || | |||||| || || ||||||||| |||| || ||||| ||
Sbjct 1190 CGCTTGTTTCCTCCTTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGG 1131
Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641
||||| |||| | | || || || || ||| | ||| |||| ||||||||
Sbjct 1130 ACGATACCGTTCGAGTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTT- 1072
Query 79642 GAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGT 79700
| | | | || ||||| || || | ||| |||||| | ||||| |||||| ||
Sbjct 1071 GTGAATCGAGAGACCGATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGT 1012
Query 79701 CTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTG 79760
|||||||| || |||||||||||||||||||| | ||| |||||||| || | ||
Sbjct 1011 GTCGTAGATACCTTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTG 952
Query 79761 TGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820
|||| || || |||||||||||||| || | ||||| |||||| | || |
Sbjct 951 AGGGTGAGGAGTTCCAGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGA 892
Query 79821 CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCG---TCG---CCGTGGATGCCGAC 79874
||| || | ||| || |||| | || || ||| ||| ||||| || || ||
Sbjct 891 CATGAGGTTGTAGGT----TTGAAGTGCTCGA--TCGATATCGCTTCCGTGAATACCAAC 838
Query 79875 CGCGACGCGCATGA 79888
||||| |||||||
Sbjct 837 AGCGACACGCATGA 824
Score = 154 bits (170), Expect = 2e-32
Identities = 396/598 (66%), Gaps = 4/598 (1%)
Strand=Plus/Plus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
||||| || | ||||||| ||||| || || || || || ||| || ||||
Sbjct 811 CCTCAACACATGCTCATGCGTGTCGCTGTTGGTATTCACGGAAGCGATATCGATCGAGCA 870
Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222
| | || ||| |||| ||| | | | |||||| ||||| | || ||||| |||
Sbjct 871 CTTCAAACCTACAACCTCATGTCCGAACGATACTTCACCCACGCTTCTCCTACCCTCTTC 930
Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282
||||| || || |||| || | || || ||||| || | |||||||| |||
Sbjct 931 AACGCTGGAACTCCTCACCCTCAACTCTCTTCTTGCTTCCTCGTCACGATGAAGGACGAC 990
Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342
|| || || |||||||| || |||||| ||||| | |||||| ||| | ||
Sbjct 991 TCGATCGAAGGTATCTACGACACCCTCAAGACTTGCGCCCTCATCTCAAAGACTGCAGGA 1050
Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401
|| ||||| || | | | | || || || ||| |||| | ||| ||| || ||
Sbjct 1051 GGAATCGGTCTCTCGATTCAC-AACATTCGTGCGACTGGTTCTTACATCGCTGGAACCAA 1109
Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460
|| || ||| |||||||||||| ||||| || || | ||||||||| || | ||||
Sbjct 1110 TGGT-TACTCGAACGGTATCGTCCCTATGCTTCGTGTTTACAACAACACTGCTCGTTACG 1168
Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520
|| | || || || ||| || || | ||||| |||||||| || || |||||||
Sbjct 1169 TCGATCAAGGAGGAAACAAGCGTCCTGGAGCTTTCGCAATCTACCTTGAACCGTGGCACG 1228
Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580
| ||| | | || |||||||| || || ||| || || | ||||| | || ||
Sbjct 1229 CCGACATTTTCGAATTCCTCGACCTCCGAAAGAATCACGGAAAGGAGGAAGTTCGTGCTC 1288
Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640
| || |||||| ||| | ||||| || ||||| |||||| || || || || | |
Sbjct 1289 GTGATCTCTTCTTCGCCCTTTGGATCCCCGACCTCTTCATGAAGCGTGTCGAAGAGAATG 1348
Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698
|| |||| || | ||||| ||| || || || | ||| || ||||||||
Sbjct 1349 GTGACTGGCCTCTCTTCTGCCCTGCTGAAGCTCCCGGACTTCACGAGGTTTACGGCGA 1406
>seq1608
Length=13696
Score = 93.3 bits (102), Expect = 5e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 59973 tttGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|||| | |||||||| | ||||| || || || ||||||||||||||||| || |||
Sbjct 13445 TTTGGAGAACGTCTCGTCGCTTTCGCCGCTGTTGAGGGAATCTTCTTCTCTGGATCTTTC 13504
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086
| | || ||||||||||| |||||||| |||||||| || || | ||||||
Sbjct 13505 GCTTCAATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCC 13558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548504970828480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |