Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq759 203 4e-47 seq1827 86.0 7e-12 >seq759 Length=2593 Score = 203 bits (224), Expect = 4e-47 Identities = 353/508 (69%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | ||||| ||||| ||| | || | | | | || ||| Sbjct 824 TCATGCGTGTCGCTGTTGGTATTCACGGAAGCGATATCGATCGAGCACTTCAAACCTACA 883 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | || ||||| || ||||| | || ||||| ||||||||||| || Sbjct 884 ACCTCATGTCCGAACGATACTTCACCCACGCTTCTCCTACCCTCTTCAACGCTGGAACTC 943 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||||||| | || |||||||| || |||||||||| ||||||||||| || | Sbjct 944 CTCACCCTCAACTCTCTTCTTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAAGGTA 1003 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC- 53431 ||||||| || |||||| || |||| |||||| ||| | || || |||||| || Sbjct 1004 TCTACGACACCCTCAAGACTTGCGCCCTCATCTCAAAGACTGCAGGAGGAATCGGTCTCT 1063 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | | | | ||| | ||||||| || | ||| || || || || | | | Sbjct 1064 CGATTCAC-AACATTCGTGCGACTGGTTCTTACATCGCTGGAACCAATGGTTACTCGAAC 1122 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||||| |||||||| || || | ||||||||| || || |||||| | || || || Sbjct 1123 GGTATCGTCCCTATGCTTCGTGTTTACAACAACACTGCTCGTTACGTCGATCAAGGAGGA 1182 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | ||||| |||||||| || |||||||||||||||||| | || Sbjct 1183 AACAAGCGTCCTGGAGCTTTCGCAATCTACCTTGAACCGTGGCACGCCGACATTTTCGAA 1242 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTAC 53670 || ||||| || || |||||| || | || || | || ||| ||||| || || Sbjct 1243 TTCCTCGACCTCCGAAAGAATCACGGAAAGGAGGAAGTTCG-TGCTCGTGATCTCTTCTT 1301 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATG 53698 || || ||||| || |||||||||||| Sbjct 1302 CGCCCTTTGGATCCCCGACCTCTTCATG 1329 >seq1827 Length=8425 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 ||| ||||||||||| || | || || || || || || ||||| ||||| |||| Sbjct 2434 GTGGGTCTCTCCAGTGGCGAGAACGAAATCATCGGGCTCGTCTTGTTGAAGCATACGCCA 2375 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| |||||||||| || | ||||| ||||| || |||||||| |||| ||| ||||| Sbjct 2374 CATACCCTCGACGTAGTCACGGGCGTGTCCCCAATCACGCTTGGCGTCCAAGTTACCGAG 2315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196218141600