Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1827 120 3e-22 seq759 105 8e-18 >seq1827 Length=8425 Score = 120 bits (132), Expect = 3e-22 Identities = 247/363 (68%), Gaps = 11/363 (3%) Strand=Plus/Plus Query 24753 GGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTAT 24812 || |||||| || || || || || ||||| ||||| || || || || ||| || Sbjct 2075 GGAAAGGTGGTTGAAACTCCTCAATCCGAGACTACTCCCTTCTACCCTCGTTCCCCTTAC 2134 Query 24813 GGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATA 24872 || || | || | | ||| | |||||| ||||||||||||||| || | || || Sbjct 2135 GGTGTAGCGAAACTCTACGCTTTCTGGATCGTCAAGAACTACCGTGAATCCTACGGAATG 2194 Query 24873 TATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGAATTT--G 24930 || || |||||| || || |||||||| || || || || |||| ||| || | Sbjct 2195 TACGCCGCCAACGGTATCCTCTTCAACCACGAATCTCCTCGACGTGGAC--GAACTTTCG 2252 Query 24931 TTACACGAAAGATTACTCTTGGTATTGACCAT---TGGATCAAG--ACAAGGGCACCTAT 24985 | || |||||||| ||| || | | | | | | | || | ||||| | ||| | Sbjct 2253 TCACCCGAAAGATCTCTCGTGCTGTCGCCGAAATCTCGCTCGGGCAACAAGAGTGCCTCT 2312 Query 24986 TGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGC 25045 | || || ||| | || ||||| ||||||||||| || || ||||||||||| | Sbjct 2313 --ACCTCGGTAACTTGGACGCCAAGCGTGATTGGGGACACGCCCGTGACTACGTCGAGGG 2370 Query 25046 CATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGAC 25105 |||||||| ||||| ||||| | |||| || ||||| || ||| ||| || |||| Sbjct 2371 TATGTGGCGTATGCTTCAACAAGACGAGCCCGATGATTTCGTTCTCGCCACTGGAGAGAC 2430 Query 25106 GCA 25108 || Sbjct 2431 CCA 2433 >seq759 Length=2593 Score = 105 bits (116), Expect = 8e-18 Identities = 483/750 (64%), Gaps = 41/750 (5%) Strand=Plus/Minus Query 81015 GTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGAT 81074 |||| ||| |||||||| |||| | ||| |||| || ||||| || | | |||||| Sbjct 1548 GTTGGCAGCATCCTTGTACAGCATGAAAGGGTTACCAGTTTCGACTTGAGCTTCGAGGAT 1489 Query 81075 GGCGTCCCAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACAT 81130 |||| ||||| || ||| || | | | | | ||| | ||||| | | Sbjct 1488 TGCGTACCAAAGCTTTTGAGCGGGCATCGTCTTCTTGGCGCGTCCTTCCTTCT----CGT 1433 Query 81131 ACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 ||||| | | ||||||| || | | | |||| || || |||| ||| ||| || Sbjct 1432 ACTTGTTGAAGAGAGCTTCG---AATTCGTCGCCGTAAACCTC-GTGAAGTCCGGGAGCT 1377 Query 81188 -CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCG 81243 | |||||| | || ||||||| | |||||| ||| ||||||||| | Sbjct 1376 TCAGCAGGGCAGAAGAGAGGCCAGTCAC---CATTCTCTTCGACACGCTTCATGAAGAGG 1320 Query 81244 TCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTT 81302 || |||||||| |||||| ||| || || || ||| || | ||||| | || || || Sbjct 1319 TCGGGGATCCAAAGGGCGAAGAAGAGATCACGAGCA-CGAACTTCCTCCTTTCCGTGATT 1261 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 || | ||||| || || | ||||| || ||||| || || || || | |||| Sbjct 1260 CTTTCGGAGGTCGAGGAATTCGAAAATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAA 1201 Query 81363 CGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 | || || | || || || | ||||||||| ||||| ||| | ||||| Sbjct 1200 AGCTCCAGGACGCTTGTTTCCTCCTTGATCGACGTAACGAGCAGTGTTGTTGTAAACACG 1141 Query 81420 CAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC 81479 | |||||||| |||||| | || | ||| || || || |||| || || | || Sbjct 1140 AAGCATAGGGACGATACCGTTCGAGTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGC 1081 Query 81480 GCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCG 81539 || | ||| || || |||||||| || |||| |||||| || | || || Sbjct 1080 ACGAATGTTGTGAATCGAGAGACCGATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGT 1021 Query 81540 GTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGC 81598 || | ||| || || || || ||||| || | ||||| || | | | ||| || Sbjct 1020 CTTGAGGGTGTCGTAGATACCTTCGATCGAGTCGTCCTTCATCGTGACG-AGGAAGCAAG 962 Query 81599 TTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 || | |||||| | ||| || || ||||| || || || | ||||| |||| Sbjct 961 AAGAGAGTTGAGGG--TGAGGAGTTCCAGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAA 904 Query 81657 ATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCG-TGGA---ATATCGTCACCGT 81712 || || | ||||| |||| ||||||| || | | | || |||||| |||| Sbjct 903 GTATCGTTCGGACATGAGGTTGTAGGTTT----GAAGTGCTCGATCGATATCGCTTCCGT 848 Query 81713 GAATACCGATAGCTACACGCATAAACATGT 81742 ||||||| | ||| |||||||| | ||||| Sbjct 847 GAATACCAACAGCGACACGCATGAGCATGT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570289783279040