Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016- 12-23] 2,892 sequences; 16,339,983 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq759 224 1e-53 seq1608 91.5 2e-13 seq174 91.5 2e-13 >seq759 Length=2593 Score = 224 bits (248), Expect = 1e-53 Identities = 457/676 (68%), Gaps = 2/676 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||| ||||| || || |||| || | | ||| || |||| ||||| | | | Sbjct 1416 TTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGGGCAGAAGAGAGG 1357 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||||||||||| || | || || ||||| ||||| || || ||||| || || | || Sbjct 1356 CCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGGCGAAGAA 1297 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 ||||| || | | | ||| || ||||| ||||||| || ||||| || || | Sbjct 1296 GAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAA 1237 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 ||| || | ||||| ||||| || || ||||| | | ||||||| || || || ||||| Sbjct 1236 AATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCC 1177 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 ||||| | || | || ||||| || ||||| | | ||| || | |||||||| || Sbjct 1176 TTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGA 1117 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 ||||| ||||||| || ||| ||| | || ||||| || ||| || | || Sbjct 1116 GTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACC 1057 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 ||||||||||| |||| || || || |||||| || | || ||||||||||| || Sbjct 1056 GATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTC 997 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || ||| ||| |||| | | || || || ||| | |||| | ||| |||||| Sbjct 996 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCC 937 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 || || || | || ||||| || || || || || ||| || | || ||||| || Sbjct 936 AGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGTTGTAGGT 877 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || || ||| || || || | | ||||| || || || |||||||| | ||| || Sbjct 876 TTGAAGTGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACGCATGAGCATGTG 817 Query 78524 CTGAGGTCTTTCAACCGTCT-TATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 ||||||| ||| | || || | || ||| | | ||| || ||| | ||||| Sbjct 816 TTGAGGTCGTTC-AGCGACTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGAGAGTTT 758 Query 78583 TAAAACCAAAATAGTT 78598 | |||||||| ||||| Sbjct 757 TGAAACCAAAGTAGTT 742 >seq1608 Length=13696 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 || || ||||| |||||||| || ||||| || |||||||| || |||| ||||||||| Sbjct 13557 GAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGAT 13498 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTG-- 48305 ||||| ||||| || || || || || || || ||| || | ||||| | |||| Sbjct 13497 CCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAGACTGAT 13438 Query 48306 GCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTT 48346 ||| | || |||||| ||||||| || |||||||| Sbjct 13437 TGTTCATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397 >seq174 Length=3683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 || ||||| ||||||||||| ||||| || | || || || | || || | || Sbjct 362 ATTTGAAACCCGTAAAAACACCTCGCCTCGGCACATTGCACTTCGGAACTGAACCTCTCG 421 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||||||||||||| || || |||||||| || ||||| ||||| || || || || Sbjct 422 ACCAAATTCTCATTGACAATGCCATCACTCGCCGCAAAGAATGCCAACACGTGCGAAACG 481 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATC 48637 |||| | ||| || ||||| | ||| | |||||||| |||||||| || ||||| Sbjct 482 AAATGTCGTTCATTCGAAGTGAGGCGTTGAGTCCAGTCAAACATATCTTTCGAGATATC 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694643687722880