Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20sp._20FNED7-22_20[genbank_20GCA_5F001914285.1_202016-
12-23] 2,892 sequences; 16,339,983 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq759 224 1e-53
seq1608 91.5 2e-13
seq174 91.5 2e-13
>seq759
Length=2593
Score = 224 bits (248), Expect = 1e-53
Identities = 457/676 (68%), Gaps = 2/676 (0%)
Strand=Plus/Minus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
||| ||||| || || |||| || | | ||| || |||| ||||| | | |
Sbjct 1416 TTCGAATTCGTCGCCGTAAACCTCGTGAAGTCCGGGAGCTTCAGCAGGGCAGAAGAGAGG 1357
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||||||||||| || | || || ||||| ||||| || || ||||| || || | ||
Sbjct 1356 CCAGTCACCATTCTCTTCGACACGCTTCATGAAGAGGTCGGGGATCCAAAGGGCGAAGAA 1297
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
||||| || | | | ||| || ||||| ||||||| || ||||| || || |
Sbjct 1296 GAGATCACGAGCACGAACTTCCTCCTTTCCGTGATTCTTTCGGAGGTCGAGGAATTCGAA 1237
Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163
||| || | ||||| ||||| || || ||||| | | ||||||| || || || |||||
Sbjct 1236 AATGTCGGCGTGCCACGGTTCAAGGTAGATTGCGAAAGCTCCAGGACGCTTGTTTCCTCC 1177
Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223
||||| | || | || ||||| || ||||| | | ||| || | |||||||| ||
Sbjct 1176 TTGATCGACGTAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGGACGATACCGTTCGA 1117
Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283
||||| ||||||| || ||| ||| | || ||||| || ||| || | ||
Sbjct 1116 GTAACCATTGGTTCCAGCGATGTAAGAACCAGTCGCACGAATGTTGTGAATCGAGAGACC 1057
Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343
||||||||||| |||| || || || |||||| || | || ||||||||||| ||
Sbjct 1056 GATTCCTCCTGCAGTCTTTGAGATGAGGGCGCAAGTCTTGAGGGTGTCGTAGATACCTTC 997
Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403
|| ||| ||| |||| | | || || || ||| | |||| | ||| ||||||
Sbjct 996 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCAAGAAGAGAGTTGAGGGTGAGGAGTTCC 937
Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463
|| || || | || ||||| || || || || || ||| || | || ||||| ||
Sbjct 936 AGCGTTGAAGAGGGTAGGAGAAGCGTGGGTGAAGTATCGTTCGGACATGAGGTTGTAGGT 877
Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523
|| || ||| || || || | | ||||| || || || |||||||| | ||| ||
Sbjct 876 TTGAAGTGCTCGATCGATATCGCTTCCGTGAATACCAACAGCGACACGCATGAGCATGTG 817
Query 78524 CTGAGGTCTTTCAACCGTCT-TATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582
||||||| ||| | || || | || ||| | | ||| || ||| | |||||
Sbjct 816 TTGAGGTCGTTC-AGCGACTCTGCCATCGATTCGGAGGAGGTAAGAACGTTCGAGAGTTT 758
Query 78583 TAAAACCAAAATAGTT 78598
| |||||||| |||||
Sbjct 757 TGAAACCAAAGTAGTT 742
>seq1608
Length=13696
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/161 (73%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248
|| || ||||| |||||||| || ||||| || |||||||| || |||| |||||||||
Sbjct 13557 GAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATTGAAGCGAAAGAT 13498
Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTG-- 48305
||||| ||||| || || || || || || || ||| || | ||||| | ||||
Sbjct 13497 CCAGAGAAGAAGATTCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCAAAGACTGAT 13438
Query 48306 GCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTT 48346
||| | || |||||| ||||||| || ||||||||
Sbjct 13437 TGTTCATCGTTGATCCACTTGAGTGCCCAGTCGGCCTTCTT 13397
>seq174
Length=3683
Score = 91.5 bits (100), Expect = 2e-13
Identities = 128/179 (72%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521
|| ||||| ||||||||||| ||||| || | || || || | || || | ||
Sbjct 362 ATTTGAAACCCGTAAAAACACCTCGCCTCGGCACATTGCACTTCGGAACTGAACCTCTCG 421
Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581
||||||||||||| || || |||||||| || ||||| ||||| || || || ||
Sbjct 422 ACCAAATTCTCATTGACAATGCCATCACTCGCCGCAAAGAATGCCAACACGTGCGAAACG 481
Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATC 48637
|||| | ||| || ||||| | ||| | |||||||| |||||||| || |||||
Sbjct 482 AAATGTCGTTCATTCGAAGTGAGGCGTTGAGTCCAGTCAAACATATCTTTCGAGATATC 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694643687722880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |