Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq23 104 5e-17 seq13 104 5e-17 seq57 98.7 2e-15 seq10 89.7 1e-12 seq1 86.0 1e-11 >seq23 Length=251238 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 8049 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 8108 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 8109 CCCACATTGGGC 8120 >seq13 Length=349228 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 205414 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 205355 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 205354 CCCACATTGGGC 205343 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 207082 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 207141 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 207142 CCCACATTGGGC 207153 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 294482 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 294423 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 294422 CCCACATTGGGC 294411 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 194029 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 194088 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 194089 CCCACATTGGGC 194100 >seq57 Length=106752 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 80804 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 80863 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 80864 CCCACATTGGGC 80875 >seq10 Length=415605 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| | ||||| || || | ||||||||||||| | ||||| | || |||||| Sbjct 170151 ATCATCGCCGAAGCGGTCGAGATCGAAAAGGAGTTCTTGACCGACGCGCTGCC-TGTCGC 170093 Query 230446 CTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| || || |||||| | | ||| | ||||||||||| | || || ||||| | Sbjct 170092 CTTGATCGGTATGAACTCATCGTTGATGTGCCAGTACATCGAGTGTGTTGCGGACCGGCT 170033 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || || || || |||| || | ||| || | ||||||| || | | ||||| Sbjct 170032 ACTCGTCGCGCTCGGGAACGATAAGCTTTACCACACGGAGAACCCGTTCGATTGGATGGA 169973 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 || |||||| | | || ||||| ||||||||||| Sbjct 169972 ACTAATTTCGATGGAGGGAAAGACGAACTTCTTCGA 169937 >seq1 Length=1017535 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| | || || ||| | ||||||||||| || || |||||||| | Sbjct 200934 CTGATCGGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTG 200875 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || |||| || | ||||| | | ||||| || | |||||||| Sbjct 200874 CTCGTCGCGCTCGGCAACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGAC 200815 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 | || ||| | | || ||||||||||||||||| Sbjct 200814 ATGATCTCGATGGAGGGCAAGACCAACTTCTTCGA 200780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821885674280