Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 82.4 9e-11 >seq10 Length=415605 Score = 82.4 bits (90), Expect = 9e-11 Identities = 399/635 (63%), Gaps = 0/635 (0%) Strand=Plus/Plus Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 ||| | || || | || || |||||| ||| | || || |||| ||| || || || Sbjct 14722 TCAGCGGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCG 14781 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 || ||||| || || | || || |||| | | ||| || || || ||||| Sbjct 14782 GGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTG 14841 Query 54110 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169 || |||||||| | | || || | |||||||| || | ||| || | | | Sbjct 14842 CGGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCG 14901 Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 || || || ||||| ||||| || || | ||| | || ||||| || | || | | | Sbjct 14902 CCGGGTCGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGC 14961 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 || || | || ||||| || || || || |||| ||| || || | || || Sbjct 14962 ATAGGCACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGG 15021 Query 54290 ATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 54349 || || ||| || ||||| ||||| || || | || ||||| | ||||| || Sbjct 15022 ATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTG 15081 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 54409 | ||| || |||||||| || || || ||| |||| | | || || ||| || Sbjct 15082 AGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAG 15141 Query 54410 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 54469 | ||| | || || || || || || | || || || ||||| || || | Sbjct 15142 AGTTGCGGGTGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGC 15201 Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529 || || | | ||||| || |||||||| | || || | || || || || Sbjct 15202 TCCGACATCAAGTTGTAGGTTTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACG 15261 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 || || ||||| | |||||||||||| | || | | ||| || || |||||| Sbjct 15262 GCAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCGTCGATCCGCAGCAAA 15321 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 || || || | |||||| ||||| || ||||| Sbjct 15322 TACGAGCGCTCGAGAGTTTTGAAACCGAAGTAGTT 15356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720442242880