Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 167 2e-36 seq30 141 1e-28 seq13 141 1e-28 seq45 131 2e-25 seq1 129 6e-25 seq17 114 1e-20 >seq10 Length=415605 Score = 167 bits (184), Expect = 2e-36 Identities = 131/157 (83%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 |||||||||||| ||||||||||| || | || || ||||||||||| || |||||||| Sbjct 170888 CGACTGGGAGCGGTTGAACGACAAGGAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 170829 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||||||| |||||||||||||||||||| || |||||||| ||| | ||||| || Sbjct 170828 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAGGTTCA 170769 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| || ||||| || |||||||||||||| |||||| Sbjct 170768 GGTCGCAGAGGCTCGCTGCTTCTACGGCTTCCAGATC 170732 Score = 127 bits (140), Expect = 2e-24 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGC 117027 || ||| |||| |||||||||| ||||| |||| |||||| | | | || || | | Sbjct 170483 CCCTGCATCAAGAAGAAGGCCGACTGGGCTTTGCGATGGATCTCTGATCCGAAAG-CGGT 170425 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||||||||| || | || ||||| || |||||||| ||||||| || || || Sbjct 170424 GTTCGGCGAGCGACTAATCGCGTTCGCAGCGGTCGAGGGGATCTTCTTCTCCGGATCGTT 170365 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| |||||||||||||| ||||| |||||||||||| |||||||| Sbjct 170364 CGCTTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCCGGCTTGACTTTC 170313 >seq30 Length=195187 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || |||||||| || ||||| |||| ||||| | || Sbjct 194809 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 194868 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 194869 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 194927 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||||||| || ||||| Sbjct 194928 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 194987 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 194988 CATCCAGAAGGAGTCGACCCTTCACCTCGT 195017 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || ||||| |||| ||||| || | Sbjct 195037 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 195096 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 195097 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 195155 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCT 40838 ||| || | |||| || ||||| ||||| Sbjct 195156 GCAGCGCTTGATCTTTGCCGGCAAGCAGCT 195185 >seq13 Length=349228 Score = 141 bits (156), Expect = 1e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAA 40769 ||||||||||| || |||||| |||| ||||| | |||||| | | |||| |||| Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 151768 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||||||| | |||||||| || ||||||| || || Sbjct 151769 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 151828 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | || || Sbjct 151829 CAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCT 151888 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | |||||| | || || Sbjct 151889 CCACCTCGTCCTCCGCTTGCGCGGTGG 151915 >seq45 Length=127924 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || ||||| |||| ||||| || | Sbjct 122 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 181 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 182 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 240 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||||| || |||| ||||||||| || ||||| Sbjct 241 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 300 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 301 CATCCAGAAGGAGTCGACCCTCCA 324 >seq1 Length=1017535 Score = 129 bits (142), Expect = 6e-25 Identities = 207/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| |||| ||| | Sbjct 201093 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCTCG 201034 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | | |||||| | | || | || ||| | ||| || ||| |||||||| Sbjct 201033 CACCTCGAACGCCGACCGCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGC 200975 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 |||||||| ||||| || || ||| ||||||| ||| | || | || | || Sbjct 200974 GATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAACTCGGA 200915 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || ||||||||||| ||||||||| || |||| ||| ||| | | || Sbjct 200914 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAACGA 200855 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| ||||| || | |||||| | ||||||||| || | ||||| ||||| Sbjct 200854 AAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 200800 Score = 127 bits (140), Expect = 2e-24 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| |||| |||| ||||| ||||| |||| |||||| | | | || || || Sbjct 201352 CCCTGCATCAAGAAGAAAGCCGACTGGGCTATGCGGTGGATCTCGGAC-GACCGGTCCAT 201294 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| || || |||||||| || ||||| |||||||||||| ||||||| |||||| || Sbjct 201293 CTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 201234 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| ||||| |||||||| || || || ||| Sbjct 201233 CGCTTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTC 201182 Score = 104 bits (114), Expect = 2e-17 Identities = 103/131 (79%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAG-CGCT--TGAACGACAACGAGCGCCATTT 116745 ||| || |||||||||| || | ||||||| || | || || ||||| | || Sbjct 201859 GGATCTCTCCAAGGACATGAACCACTGGGACACGAAGCTCAAGGATGACGAGAAGTACTT 201800 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||||||||||||||||||||| || |||||| |||||||||||||||||||| |||| Sbjct 201799 CATCAAGCACGTGCTGGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 201740 Query 116806 CGAGCGTTTCG 116816 |||||| |||| Sbjct 201739 CGAGCGGTTCG 201729 >seq17 Length=321613 Score = 114 bits (126), Expect = 1e-20 Identities = 109/138 (79%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 237275 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCAT 237333 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || ||||| ||||| || |||| ||||||||| |||||||||||||||||||| Sbjct 237334 CTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 237393 Query 40881 GGCCACGCTGCATCTAGT 40898 | | || || || || || Sbjct 237394 GTCGACCCTCCACCTCGT 237411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218195322560