Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01-
26] 156 sequences; 19,393,393 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq10 167 2e-36
seq30 141 1e-28
seq13 141 1e-28
seq45 131 2e-25
seq1 129 6e-25
seq17 114 1e-20
>seq10
Length=415605
Score = 167 bits (184), Expect = 2e-36
Identities = 131/157 (83%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769
|||||||||||| ||||||||||| || | || || ||||||||||| || ||||||||
Sbjct 170888 CGACTGGGAGCGGTTGAACGACAAGGAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 170829
Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829
||||||| |||||||||||||||||||| || |||||||| ||| | ||||| ||
Sbjct 170828 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAGGTTCA 170769
Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
||| || ||||| || |||||||||||||| ||||||
Sbjct 170768 GGTCGCAGAGGCTCGCTGCTTCTACGGCTTCCAGATC 170732
Score = 127 bits (140), Expect = 2e-24
Identities = 133/172 (77%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGC 117027
|| ||| |||| |||||||||| ||||| |||| |||||| | | | || || | |
Sbjct 170483 CCCTGCATCAAGAAGAAGGCCGACTGGGCTTTGCGATGGATCTCTGATCCGAAAG-CGGT 170425
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||||||||||| || | || ||||| || |||||||| ||||||| || || ||
Sbjct 170424 GTTCGGCGAGCGACTAATCGCGTTCGCAGCGGTCGAGGGGATCTTCTTCTCCGGATCGTT 170365
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||| |||| |||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 170364 CGCTTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCCGGCTTGACTTTC 170313
>seq30
Length=195187
Score = 141 bits (156), Expect = 1e-28
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || |||||||| || ||||| |||| ||||| | ||
Sbjct 194809 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 194868
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| ||||||||||| | |||||
Sbjct 194869 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 194927
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| ||||||||| || |||||
Sbjct 194928 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 194987
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 194988 CATCCAGAAGGAGTCGACCCTTCACCTCGT 195017
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || ||||| |||| ||||| || |
Sbjct 195037 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 195096
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| ||||||||||| | |||||
Sbjct 195097 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 195155
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCT 40838
||| || | |||| || ||||| |||||
Sbjct 195156 GCAGCGCTTGATCTTTGCCGGCAAGCAGCT 195185
>seq13
Length=349228
Score = 141 bits (156), Expect = 1e-28
Identities = 157/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAA 40769
||||||||||| || |||||| |||| ||||| | |||||| | | |||| ||||
Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 151768
Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829
|| || || | ||||| |||||||||||| | |||||||| || ||||||| || ||
Sbjct 151769 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 151828
Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889
||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | || ||
Sbjct 151829 CAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCT 151888
Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || | |||||| | || ||
Sbjct 151889 CCACCTCGTCCTCCGCTTGCGCGGTGG 151915
>seq45
Length=127924
Score = 131 bits (144), Expect = 2e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || ||||| |||| ||||| || |
Sbjct 122 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 181
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| ||||||||||| | |||||
Sbjct 182 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 240
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || ||||| ||||| || |||| ||||||||| || |||||
Sbjct 241 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 300
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || || ||
Sbjct 301 CATCCAGAAGGAGTCGACCCTCCA 324
>seq1
Length=1017535
Score = 129 bits (142), Expect = 6e-25
Identities = 207/295 (70%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||||||||| || |||||||||||| |||| ||| |
Sbjct 201093 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCTCG 201034
Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | | |||||| | | || | || ||| | ||| || ||| ||||||||
Sbjct 201033 CACCTCGAACGCCGACCGCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGC 200975
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
|||||||| ||||| || || ||| ||||||| ||| | || | || | ||
Sbjct 200974 GATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAACTCGGA 200915
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || ||||||||||| ||||||||| || |||| ||| ||| | | ||
Sbjct 200914 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAACGA 200855
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| ||||| || | |||||| | ||||||||| || | ||||| |||||
Sbjct 200854 AAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 200800
Score = 127 bits (140), Expect = 2e-24
Identities = 133/172 (77%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027
|| ||| |||| |||| ||||| ||||| |||| |||||| | | | || || ||
Sbjct 201352 CCCTGCATCAAGAAGAAAGCCGACTGGGCTATGCGGTGGATCTCGGAC-GACCGGTCCAT 201294
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||| || || |||||||| || ||||| |||||||||||| ||||||| |||||| ||
Sbjct 201293 CTTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 201234
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||| |||| || ||||||||||| ||||| |||||||| || || || |||
Sbjct 201233 CGCTTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTC 201182
Score = 104 bits (114), Expect = 2e-17
Identities = 103/131 (79%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAG-CGCT--TGAACGACAACGAGCGCCATTT 116745
||| || |||||||||| || | ||||||| || | || || ||||| | ||
Sbjct 201859 GGATCTCTCCAAGGACATGAACCACTGGGACACGAAGCTCAAGGATGACGAGAAGTACTT 201800
Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805
||||||||||||||||||||| || |||||| |||||||||||||||||||| ||||
Sbjct 201799 CATCAAGCACGTGCTGGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 201740
Query 116806 CGAGCGTTTCG 116816
|||||| ||||
Sbjct 201739 CGAGCGGTTCG 201729
>seq17
Length=321613
Score = 114 bits (126), Expect = 1e-20
Identities = 109/138 (79%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| |||||| || || | ||||| |||||||||||| | |||||||| || |||||
Sbjct 237275 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCAT 237333
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| || ||||| ||||| || |||| ||||||||| ||||||||||||||||||||
Sbjct 237334 CTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 237393
Query 40881 GGCCACGCTGCATCTAGT 40898
| | || || || || ||
Sbjct 237394 GTCGACCCTCCACCTCGT 237411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218195322560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |