Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq10 174 3e-38 seq12 96.9 7e-15 seq1 87.8 4e-12 >seq10 Length=415605 Score = 174 bits (192), Expect = 3e-38 Identities = 446/672 (66%), Gaps = 13/672 (2%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||| | ||||||||| || ||| |||||| | || || || ||||| | | ||| Sbjct 15351 CTTCGGTTTCAAAACTCTCGAGCGCTCGTATTTGCTGCGGATCGACGGCAAAGTGGCGGA 15292 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT--GACATAGAG 248943 || |||||||||| | ||||| || || ||||| || ||| ||| ||||| || Sbjct 15291 GCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCAC--GGACCCGACATCAAG 15234 Query 248944 AGCGTGCT--CGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGA 249001 |||||| ||| || |||| | ||| || |||| | || || || | || | Sbjct 15233 --CGTGCTATCGAAACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCA 15176 Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 |||| ||||||||||||||| || || || || ||||| || | |||||| Sbjct 15175 CGCTGTTCAACGCCGGTACCCCTCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGC 15116 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120 | |||||||| |||| ||||| || |||||||| || || | ||| || || || Sbjct 15115 AGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACTTGC-GCGCTCATCTCCAAG 15057 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 |||||||| |||||||| || | ||||||||| |||| |||||||||||| Sbjct 15056 ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGACCGGTTCGTACATCGCC 14997 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240 || || || || | |||| ||||| || | || || ||| | ||| || Sbjct 14996 GGCACGAACGGCTACTCGAATGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCG 14937 Query 249241 AGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 | | | | |||| | || | ||| || ||||||| || || | || | Sbjct 14936 CGTTACGTGGACCAAGGAGGCAACAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCG 14877 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 ||||||||||| || || || ||||| ||| | |||||| ||||||| || | Sbjct 14876 TGGCACGCCGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAAGAAGTC 14817 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | ||||| |||||||||| || |||||| || ||||| |||||||| |||||| || Sbjct 14816 CGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTGTTCATGGAACGCGTCGAG 14757 Query 249418 GCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACAC 249477 ||| ||| ||| |||| | | || | || || || | |||| ||| | || Sbjct 14756 CAGAACGCCGAGTGGCCGCTGTTCTGCCCCGCTGAGGCGCCCGGCCTCCACGACGTCTAC 14697 Query 249478 GGCGCCGACTTC 249489 |||| ||| ||| Sbjct 14696 GGCGACGAGTTC 14685 >seq12 Length=397741 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 254195 ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGA 254254 |||||||| ||||| |||||| || | ||||| |||||||| ||| | |||||| || Sbjct 270688 ACCCGGCT--CCGCCGTTCAAGATCATCATCCTCGACGAGGCCGACTCGATGACGCAGGA 270631 Query 254255 CGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314 |||||| || ||||| ||||||| ||||| || ||||| | || || || ||||| Sbjct 270630 CGCGCAATCTGCCCTGCGCCGAATCATGGAAACCTACTCCAAGATCACTCGCTTCTGCCT 270571 Query 254315 GGTGTGCAACTACGT 254329 | ||||||||||| Sbjct 270570 CATCTGCAACTACGT 270556 >seq1 Length=1017535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 115399 AATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATG 115458 || || ||||| || ||| |||||||||||||||||| || | |||||| | | Sbjct 837057 AAGATGGCACACCTCGACTGGATCGGTTCGATGATTTTGTTGCTCTGGTTGCACGCGAGT 837116 Query 115459 ATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCA 115518 |||||| |||||| ||||||| | ||||| | || || || ||||| || || Sbjct 837117 GCGAACCGGGTCGTGTTCGAGTACAGTTCCATCGTGCGGCGGAGGGCCTGCTGCGCGCCG 837176 Query 115519 GGTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 | ||||||||||| || |||||||| | ||| | ||| Sbjct 837177 GTCGTCATCGAGTCGGCTTCGTCGAGGATGACGAGCTT 837214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764253809408