Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 253 2e-62 seq30 116 3e-21 seq45 91.5 1e-13 seq13 87.8 2e-12 >seq10 Length=415605 Score = 253 bits (280), Expect = 2e-62 Identities = 505/742 (68%), Gaps = 16/742 (2%) Strand=Plus/Plus Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||||||||||||||| | ||| | ||| || |||| Sbjct 14560 TCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTACCAC 14619 Query 23204 ATAGTCTGAGCG-----TGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGT 23258 | |||| || || || | | || || ||| |||||| ||||||| | | Sbjct 14620 AACTTCTGCGCCGAGATTGTACGCTTGGCGCGACCCT-CCTTCT----CGTACTTCTCGA 14674 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA-CAC 23317 | | ||| || ||| | ||||| |||| |||||||||| | || ||| || Sbjct 14675 AGAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCT-CAGCGGGGCAG 14733 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 | || |||| | || | || |||||| ||| || || || || ||||| || Sbjct 14734 AACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGC 14793 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 ||| |||| || || || ||||| || || || |||||| |||||| | || | Sbjct 14794 GCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGG 14853 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||||| || | ||| || ||||||||||| ||||| | || |||||||| |||| ||| Sbjct 14854 AAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTG 14913 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| || || || |||||||| |||||||||||| | || | ||||| ||||||| Sbjct 14914 TTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATG 14973 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 || || || |||| ||| || | |||||| | || || | |||||||| Sbjct 14974 CCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGAA-- 15031 Query 23618 TGGAA--ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 | ||| ||| || || || | | || || || | |||||| || || ||||||| Sbjct 15032 TCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGT 15091 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 ||||||| ||||| ||| || | | | ||| | ||| || || || | ||||| | Sbjct 15092 AGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGT 15151 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 || ||| |||| |||||| || || ||||| || ||||| | | |||||| | Sbjct 15152 GAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATCA 15211 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 ||||| || ||||| || | ||||| |||||| || |||| ||| ||||||| Sbjct 15212 AGTTGTAGGTTTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAACGCGCA 15271 Query 23856 TCATCATGTATTGAGGTCTCTC 23877 | | ||||| ||||| | ||| Sbjct 15272 TGAGCATGTGCTGAGGACGCTC 15293 Score = 131 bits (144), Expect = 1e-25 Identities = 222/318 (70%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || ||||||||||| ||||| || || |||||||| ||||| | | ||| Sbjct 170250 AACGAGCTCATCTCGCGCGACGAAGGTCTTCACACCGATTTTGCCTGCCTCCTCTTTTCT 170191 Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196 ||| | | || | | ||||| || ||| ||| |||| ||||||| | Sbjct 170190 CACCTCGAGCGCCGTCCCGCTCCTCATCGCGTCGCCCGCATCATCGCCGAAGCGGTCGAG 170131 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGAT 58256 |||||||| ||||| | ||||| || || || || ||| || ||||||||||| | || Sbjct 170130 ATCGAAAAGGAGTTCTTGACCGACGCGCTGCCTGTCGCCTTGATCGGTATGAAC--TCAT 170073 Query 58257 --TTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA- 58313 ||||||| ||||||| |||| |||||| ||| | || | ||| || ||| Sbjct 170072 CGTTGATGTGCCAGTACATCGAGTGTGTTGCGGACCGGCTACTCGTCGCGCT--CGGGAA 170015 Query 58314 -GAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGG 58372 || | |||| ||||| | || ||||| |||| ||| | || || ||| | ||||| Sbjct 170014 CGATAAGCTTTACCACACGGAGAACCCGTTCGATTGGATGGAACTAATTTCGATGGAGGG 169955 Query 58373 CAAGACAAACTTTTTCGA 58390 ||||| ||||| ||||| Sbjct 169954 AAAGACGAACTTCTTCGA 169937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| |||| | |||||||||||||| || ||||| || || ||||| || || || Sbjct 170424 GTTCGGCGAGCGACTAATCGCGTTCGCAGCGGTCGAGGGGATCTTCTTCTCCGGATCGTT 170365 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || | || |||||| | ||||| ||||| || ||||||||| |||| || Sbjct 170364 CGCTTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCCGGCTTGACTTT 170314 >seq30 Length=195187 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| |||||||| |||| || || ||||| Sbjct 194809 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 194868 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | |||||||||||| Sbjct 194869 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 194928 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | || ||| || | ||||| ||| Sbjct 194929 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 194988 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| ||||| || || || Sbjct 194989 ATCCAGAAGGAGTCGACCCTTCACCTCGTCCT 195020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||||| |||| || || | || Sbjct 195036 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 195095 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | ||||||||||| Sbjct 195096 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 195155 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAG 31339 |||||| | || || || ||||| ||| Sbjct 195156 GCAGCGCTTGATCTTTGCCGGCAAGCAG 195183 >seq45 Length=127924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||||| |||| || || | || Sbjct 121 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 180 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | ||||||||||| Sbjct 181 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 240 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || || ||||| ||| | || ||| || | ||||| || Sbjct 241 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 300 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 301 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 333 >seq13 Length=349228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| ||||||||| |||| || || ||||||||| |||| | ||||| Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 151769 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || ||||||||| ||| | || ||||||||||||||||| || || || ||| Sbjct 151770 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 151829 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| ||| | || || ||||| || || || ||||| || Sbjct 151830 AAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 151889 Query 31394 CATCTGGTACT 31404 || || || || Sbjct 151890 CACCTCGTCCT 151900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765530755520