Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=1017535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| |||| || || ||||||| | |||||||| || || || || | ||| Sbjct 200985 GAGGCGGTCGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGC 200926 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||| || | | |||||| |||||||||||||||| || ||| | || | | | Sbjct 200925 ATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCG 200866 Query 52957 CTCGGTCAGCCGAAATA-CTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015 ||||| || | ||| | || || ||| |||||| || |||||| ||| || || Sbjct 200865 CTCGG-CAACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTC 200807 Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAG 53045 | | |||||||| || ||||| |||||||| Sbjct 200806 GATGGAGGGCAAGACCAACTTCTTCGAGAG 200777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063032675200