Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 seq85 95.1 2e-14 seq10 87.8 3e-12 >seq1 Length=1017535 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| || ||||||||| |||||| ||| | | || | ||||| || ||| Sbjct 201328 TGGGCTATGCGGTGGATCTCGGACGACCGGTCCATCTTTGGTGAACGCCTGGTCGCGTTC 201269 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 |||||||| |||||||||||||| ||||| || || ||||||| |||||||||||| Sbjct 201268 GCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAG 201209 Query 125499 CGCGGACTCATGCCCGGACTGAC 125521 ||||| |||||||| || || || Sbjct 201208 CGCGGTCTCATGCCGGGTCTCAC 201186 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAA 125716 ||| || |||||||| || || || | | ||||||| |||| |||||||||| | Sbjct 200974 GATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAACTCGGA 200915 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG 125776 || |||||| ||||||| |||||||| || || || | || || | | ||| Sbjct 200914 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTC---GGCAA 200858 Query 125777 C---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 | ||||||||||| || | || || || || || ||| || || || | ||||| Sbjct 200857 CGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 200798 Query 125834 TAAGACCAACTTTTTCGAGA 125853 ||||||||||| ||||||| Sbjct 200797 CAAGACCAACTTCTTCGAGA 200778 >seq85 Length=45273 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| ||||||||||| ||||||| || |||| |||||||| | | || || | Sbjct 15008 CCGTGGGTCAGGTGGCCGCCGTCGGCGAGGCCGAGGCCCATGATGCGGTCCTGGGGCTGG 14949 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | ||||||||||||| ||||||| |||||||| || || || Sbjct 14948 ATGAGGGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCGGAGTACGGCTGGACGTTGACG 14889 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| | ||||| | | |||||| ||| |||| ||| || | ||| Sbjct 14888 CCCCAGACCTTCTCGTCGAGGTGGAACGCCGCGAGGGCGCGCTTCTGGCAGAGGATCTCG 14829 Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686 | |||| | |||||| || || ||||| || ||||| ||||||||||||| Sbjct 14828 AGCTCGTCGACGACCTCGTTGCCGCCGTAGTAGCGGGCGCCGGGGAGACCCTCCGAGTAC 14769 Query 127687 TTGTTGATGA 127696 |||||| ||| Sbjct 14768 TTGTTGGTGA 14759 >seq10 Length=415605 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 || || ||| |||| | || ||||| || || ||||| |||||||| || || || Sbjct 170424 GTTCGGCGAGCGACTAATCGCGTTCGCAGCGGTCGAGGGGATCTTCTTCTCCGGATCGTT 170365 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || ||||||||||||||||||||||||| ||||||||||| |||| Sbjct 170364 CGCTTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCCGGCTTGAC 170317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057754934560