Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 2e-11 seq1 84.2 2e-11 >seq10 Length=415605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 119664 TCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCA 119723 || || || || ||||| ||||| | || || | ||| | ||||| || || | Sbjct 169937 TCGAAGAAGTTCGTCTTTCCCTCCATCGAAATTAGTTCCATCCAATCGAACGGGTTCTCC 169996 Query 119724 GTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGATG 119783 |||| | || |||| |||| || | | ||| | || || || || ||| |||||||| Sbjct 169997 GTGTGGTAAAGCTTATCGTTCCCGAGCGCGACGAGTAGCCGGTCCGCAACACACTCGATG 170056 Query 119784 TATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAAAG 119843 || | |||||| | || ||||| || | || ||||| || | || | ||| ||| Sbjct 170057 TACTGGCACATCAACGATGAGTTCATACCGATCAAGGCGACAGGCAGCGCGTCGGTCAAG 170116 Query 119844 AAATCCTTTTCAATGTCGACCGCTTC 119869 || |||||||| || ||||||||||| Sbjct 170117 AACTCCTTTTCGATCTCGACCGCTTC 170142 >seq1 Length=1017535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 119664 TCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCA 119723 || || || || ||||||||||| | || || | | |||||| ||||| || || | Sbjct 200780 TCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAGTC 200839 Query 119724 GTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGATG 119783 | ||| || ||| |||| ||| | | ||| | || || || || |||||||||||| Sbjct 200840 GCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGATG 200899 Query 119784 TATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAAAG 119843 || | ||||||| | ||| |||||||| | || |||||| || || | || | | Sbjct 200900 TACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACCGGCAACGCGTCCGTCAGG 200959 Query 119844 AAATCCTTTTCAATGTCGACCGCTTC 119869 || || | || || ||||||| || Sbjct 200960 AACTCTTGCTCGATCGCGACCGCCTC 200985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661466608320