Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10 165 2e-35 >seq10 Length=415605 Score = 165 bits (182), Expect = 2e-35 Identities = 302/441 (68%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| |||| || ||| ||| || || || | | | || || | || || Sbjct 15194 TTCACTCACGCGTCGCCCACGCTGTTCAACGCCGGTACCCCTCACCCGCAACTCTCGTCC 15135 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||| ||||||| || ||||| || |||| ||||| || |||| | Sbjct 15134 TGCTTCCTCGTCACCATGCAGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACT 15075 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || ||||||| ||| ||||| || ||| | ||||| ||||| | || || Sbjct 15074 TGCGCGCTCATCTCCAAGACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGC- 15016 Query 363727 CAGAACAGTT---ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | ||| |||| |||||| || ||||||||||| | || || ||||| Sbjct 15015 --GACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAATGGCATCGTGCCTATGCTC 14958 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| || ||| | ||||| ||||| || || ||||| || ||| Sbjct 14957 CGCGTCTTCAACAACACGGCGCGTTACGTGGACCAAGGAGGCAACAAGCGACCCGGCGCG 14898 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || || || || ||||| || ||||| || || || || || || ||||| || Sbjct 14897 TTCGCGATCTACCTTGAGCCGTGGCACGCCGACATCTTCGACTTCCTCGACCTCCGCAAG 14838 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| | || || || || || |||| || || ||| | | ||| Sbjct 14837 AACCACGGCAAGGAAGAAGTCCGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGAC 14778 Query 363964 CATTTTATGAAGCGCGTGGAG 363984 | || ||| | ||||| ||| Sbjct 14777 CTGTTCATGGAACGCGTCGAG 14757 Score = 95.1 bits (104), Expect = 3e-14 Identities = 188/272 (69%), Gaps = 10/272 (4%) Strand=Plus/Minus Query 364890 CGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGT 364949 ||||||||| || |||| ||| ||||||||| ||||| || || || || | Sbjct 13615 CGACCGCGGTCTTTGGGACGACGCGATGAAGAACACCATCATTGCTCACAACGGCTCGAT 13556 Query 364950 GCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAAT 365009 |||||| | || | || || || |||||| || ||||| ||||| |||||||| Sbjct 13555 TCAGAACGTCCCCAACATCCCCGACGAACTGAAGAGGATCTACAAGACCGTCTGGGAAAT 13496 Query 365010 TTC-CATGCGAA-CTC-TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAG 365066 ||| || ||| || |||| || ||||||||||||| || ||||| ||| ||| Sbjct 13495 TTCGCA---GAAGGTCGTCATCGACTTGGCGGCCGATCGTGGAGCTTTCATCGACCAGTC 13439 Query 365067 CCAGTCGTTTAACGTATTCATGACTC--AGCCAACCTCCGCCAAGCTTACATCCATGCAT 365124 |||||| | ||| || ||| ||| ||| ||| || |||| || |||||| Sbjct 13438 GCAGTCGCTCAAC--ATCCATCTCTCTTCGCCGACCATGGCGCAGCTCACGAGCATGCAC 13381 Query 365125 TTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| |||||| || || ||||| || Sbjct 13380 TTCTACGGCTGGAAAAAGGGACTCAAGACCGG 13349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350994921992