Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq45 127 2e-24 seq30 118 1e-21 seq1 113 4e-20 seq13 111 1e-19 seq17 91.5 1e-13 >seq45 Length=127924 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | |||||||||||| || ||||||||||| Sbjct 348 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 289 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| || ||||||||||| || ||| Sbjct 288 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 229 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 228 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 169 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || || || || ||||| ||||||||| Sbjct 168 TCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| || || | || | |||||||||||| || ||||||||||| Sbjct 121 GCCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 62 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| || |||| || ||||||||||| || || Sbjct 61 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGG 2 Query 131127 G 131127 | Sbjct 1 G 1 >seq30 Length=195187 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| || || | || | |||||||||||| || ||||||||||| Sbjct 195036 GCCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 194977 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 194976 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 194917 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 194916 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 194857 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || || || || ||||| Sbjct 194856 CTCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 ||||||||||| || |||| || ||||||||||| || ||||| || || ||||| | Sbjct 195185 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 195126 Query 131146 ATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTA 131205 || || ||||| | || | || || | |||||||| |||| || | || || Sbjct 195125 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 195066 Query 131206 CCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || ||||| ||||||||| Sbjct 195065 CCCGTGAGGGTCTTGACGAAGATCTGCATG 195036 >seq1 Length=1017535 Score = 113 bits (124), Expect = 4e-20 Identities = 220/319 (69%), Gaps = 7/319 (2%) Strand=Plus/Minus Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAA 46319 |||||||| || |||||||||||||| || || || |||||||| || || || | | Sbjct 201093 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCTCG 201034 Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGT 46379 ||| | | ||| | | | | |||||||| || | |||| || |||||||| Sbjct 201033 CAC---CTCGAACGCCGACCGCAC-CCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 200978 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 || || ||| | ||||| | |||| ||| |||| | ||| | ||||||||| | Sbjct 200977 CGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAACTC 200918 Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 | |||||| | |||||||||||||| || ||||| ||||||| || || || Sbjct 200917 GGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGC-TCGGCA 200859 Query 46500 GCCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | || |||| | | ||| || || || || |||||| ||| ||||| |||||| Sbjct 200858 ACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAGG 200799 Query 46559 GCAAAACTAATTTTTTCGA 46577 |||| || || || ||||| Sbjct 200798 GCAAGACCAACTTCTTCGA 200780 >seq13 Length=349228 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| || || || | || | |||||||||||| || |||||||| || Sbjct 151915 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 151856 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 151855 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 151796 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 151795 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 151736 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | || || || || || Sbjct 151735 TCGAGGGTGATCGTCTTGCCCGTGAG 151710 >seq17 Length=321613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || |||||||| || | |||||| |||||| ||||||||||| Sbjct 237400 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 237341 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || |||| | |||||||||||| || ||||| || || ||||| Sbjct 237340 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 237296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011879575040