Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq64 114 3e-20 seq23 114 3e-20 seq13 114 3e-20 seq2 114 3e-20 seq57 109 1e-18 seq1 102 2e-16 >seq64 Length=90810 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || |||||||| |||||||||||||| || ||| | |||||||| || | Sbjct 88781 GGTTCGCTCTCGGGTGGATGGAAGATGAAGCTCGCGCTCGCGCGCGCCATCCTGTTCGAG 88840 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| ||||||||| ||||| | ||||| |||||| Sbjct 88841 GCCGACATTCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTCCTGAACGTTGCCTGG 88900 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| | || |||| | | || |||| ||||| |||||||| Sbjct 88901 CTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACGTCGATCATCGTCTCGCACGACTCG 88960 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA 279923 |||||||| | ||| ||| | | |||| | |||| ||| ||| Sbjct 88961 GGCTTCCTGAACAACGTCTGCACGGACATCCTCCACT-TGAACAA 89004 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | ||||| || ||| |||| ||||| || || |||| |||| ||||||| Sbjct 89383 GTCCTCGGACCGAACGGTTCGGGCAAGTCGACGCTCGTCAAGCTCCTCGTCAACGAGACC 89442 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || | | |||| || | | |||||||| |||||| || || | ||||||||| Sbjct 89443 GAGCCGAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCG 89502 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||| |||||||||||||| ||||||| |||| ||| || Sbjct 89503 CAGCACGCGTTCCACCACATCGACCACCACCTCGACAAGACCCC 89546 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738 ||||| || || ||||| || || ||| | || || |||||||| || || || ||||| Sbjct 90047 GGTCTTGAGCCGGAGTTCACTACGCACAACACG-ATGCGCGGTCTCTCCGGTGGTCAGAA 90105 Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 |||||| | ||| | | || || |||| | ||||||| | || |||||||||| Sbjct 90106 GGTCAAGGTCGTCCTTGCCGCCGCGACCTGGCGTCGCCCTCACATCGTCATTCTCGACGA 90165 Query 280799 GCCTACCAACTATCTGGACCGCGAG 280823 ||| |||||||| || ||||||||| Sbjct 90166 GCCGACCAACTACCTCGACCGCGAG 90190 >seq23 Length=251238 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 8048 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 8107 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 8108 CCCCACATTGGGC 8120 >seq13 Length=349228 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 205415 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 205356 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 205355 CCCCACATTGGGC 205343 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 207081 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 207140 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 207141 CCCCACATTGGGC 207153 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 294483 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 294424 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 294423 CCCCACATTGGGC 294411 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||| Sbjct 194028 AGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 194087 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 194088 CCCCACATTGGGC 194100 >seq2 Length=990341 Score = 114 bits (126), Expect = 3e-20 Identities = 121/158 (77%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| || ||||| || || ||||| |||| ||||||||| Sbjct 101508 GGTATCGTCGGACCCAACGGTGCCGGAAAGTCGACGCTCATCAAGCTCCTCACTGGCGAG 101449 Query 280230 AC---CCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || || || ||| ||| ||| |||||| || ||| |||| || || |||||| Sbjct 101448 ACTCTCCCGGACAC---GGGCCGCGTCGAGAAGCACCCGAACTTGCGTATCGCCTACGTC 101392 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGA 280324 || |||||||| ||||||||||||||| | ||||| || Sbjct 101391 GCGCAGCACGCCTTCCACCACATCGAGCAGCACCTCGA 101354 >seq57 Length=106752 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||| Sbjct 80803 AGCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 80862 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 80863 CCCCACATTGGGC 80875 >seq1 Length=1017535 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||||||| ||||| | ||||| |||||||| ||||| || Sbjct 200780 TCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAGTC 200839 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||| || || |||| | ||||| || |||||||| | Sbjct 200840 GCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGATG 200899 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 ||||| | ||| || || ||||||||||| |||| Sbjct 200900 TACTGGCACATGAGGTCCGAGTTCATGCCGATCA 200933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834745611196