Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq45 178 2e-39 seq30 161 2e-34 seq2 111 3e-19 seq64 107 4e-18 seq57 104 4e-17 seq13 104 4e-17 seq1 104 4e-17 seq10 100 5e-16 seq23 98.7 2e-15 >seq45 Length=127924 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||| | |||||||| || || ||||| || |||||||| ||||| || Sbjct 349 TCCACCACGAAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 290 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| ||||| || || | | || |||||||| || Sbjct 289 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGG 230 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| ||||| ||||| | || || || Sbjct 229 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 170 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || |||||||||||||||||||| |||||||| Sbjct 169 CTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq30 Length=195187 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || || ||||| || |||||||| ||||| ||| Sbjct 195035 CCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 194976 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || |||||||| || Sbjct 194975 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 194916 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||| ||||| | || || || Sbjct 194915 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 194856 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || ||||| ||||||||||| || || ||||| Sbjct 194855 TCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| ||||| || || | | || |||||||| || ||||| |||||||| || || Sbjct 195183 CTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGAT 195124 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||| ||||||||| ||||| ||||| | || || || || | ||||| || || || Sbjct 195123 CTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCC 195064 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||||||| |||||||| Sbjct 195063 CGTGAGGGTCTTGACGAAGATCTGCAT 195037 >seq2 Length=990341 Score = 111 bits (122), Expect = 3e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||||||| || | | | || ||||| | ||| || |||||||| Sbjct 101321 TAACGCCACATGATGTACTGCACGGCCGACTTCTCGAGGTGCTGCTCGATGTGGTGGAAG 101380 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| || ||||| || || |||| ||| || |||||| || | | |||| ||| Sbjct 101381 GCGTGCTGCGCGACGTAGGCGATACGCAAGTTCGGGTGCTTCTCGAC-GCGGCCCGTGTC 101439 Query 225098 -GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 || | | |||||| ||||||| |||||||||||| | ||| || ||||| ||||| || Sbjct 101440 CGGGAGAGTCTCGCCAGTGAGGAGCTTGATGAGCGTCGACTTTCCGGCACCGTTGGGTCC 101499 >seq64 Length=90810 Score = 107 bits (118), Expect = 4e-18 Identities = 368/562 (65%), Gaps = 34/562 (6%) Strand=Plus/Minus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTG 225507 |||||||| |||||||| || || ||||| |||| || || | | || ||||| Sbjct 88968 AGGAAGCCCGAGTCGTGCGAGACGATGATCGACGTGCAAGT-CTTGAGCGAGCAGAGGTA 88910 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | |||||| || ||||| |||||||| |||||| || || ||||| || || || Sbjct 88909 GTTCTCGAGCCAGGCAACGTTCAGGACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAG 88850 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 ||||| || || | ||||||||||||| ||| | |||||||| ||||| || || || Sbjct 88849 AATGTCGGCCTCGAACAGGATGGCGCGCGCGAGCGCGAGCTTCATCTTCCATCCACCCGA 88790 Query 225628 CAGGGAGCCGATTGAAACAGAGTGCT-TAGCT---TCGTCAAAGCCG---TACTCCAGGA 225680 || || ||||| | | | | || ||| ||| |||||| |||| || | Sbjct 88789 GAGCGAACCGATCG---CGGCCTCCTGGCGCTCGCGCGT-GAAGCCGACCGACTCGAGAA 88734 Query 225681 GCGTCTGGATAATGCGCTCGG----GAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736 || |||| ||||| |||| | || | | ||| || || ||||| Sbjct 88733 CGGTGCGGATCTCCTCCTCGGTCTTGAGA-ATACGCTTG---TCCTTGAGGACGAACGAG 88678 Query 225737 AGGTAATC--ATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACA 225794 | | ||| | ||||| ||| || |||| | |||||| || ||||| | Sbjct 88677 ACG--ATCGAGTTCTCGGTCTCGTC----AC-----CGTCGACGTCGTGCTCGACGTAGA 88629 Query 225795 CCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGA 225854 || |||| || | ||||| ||||| | ||| || || | ||||| || | Sbjct 88628 AGGTGCGGACCTCGTCCGGGGACGGGAAACCCTCGACCTGACCGTTGTCGATCGCGCGCA 88569 Query 225855 GCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGA 225914 ||||| |||||| | |||||| | || ||| |||||| | | || ||||||| Sbjct 88568 TGAGGGTCGACTTGCCGGAACCGTTGCGGCCACAGAGACCGTAACGGTGACCACGCTTGA 88509 Query 225915 TGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAAT 225974 ||| || | ||| || ||||||||| | || ||||| || ||||| ||| | Sbjct 88508 GACGGAGCGTCGCAGTGTTGAGCAGGATCTTGGCGCCGTAGGCGAGCGAGAAGGTGCAGT 88449 Query 225975 CGCACAGGTCCTCACCCTCCTC 225996 |||||||||||| |||||||| Sbjct 88448 TGCACAGGTCCTCGCCCTCCTC 88427 Score = 96.9 bits (106), Expect = 6e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 224465 ACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAGCGACTCGCGGTCAAGG 224524 |||||||| || | || ||| || || ||||| | |||||||||||||| ||| Sbjct 90237 ACACCGCCCTCGTACTCCTTAAGCGCCGAGATGAGCGCAGCGAGCGACTCGCGGTCGAGG 90178 Query 224525 AAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCACAGGGCTGCACCAACC 224584 |||| |||||||| || || |||| | ||| |||| |||| || || ||| Sbjct 90177 TAGTTGGTCGGCTCGTCGAGAATGACGATGTGAGGGCGACGCCAGGTCGCGGCGGCAAGG 90118 Query 224585 ACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGAGTGAGTCGTGAATTCG 224644 || | ||| ||||||||||| || ||||| ||||| ||| ||| || ||||| || Sbjct 90117 ACGACCTTGACCTTCTGACCACCGGAGAGACCGCGCATCGTGTTGTGCGTAGTGAACTCC 90058 Query 224645 GGGTCAAGACC 224655 || |||||||| Sbjct 90057 GGCTCAAGACC 90047 >seq57 Length=106752 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||||||||| | || ||||||| || |||||||||||||||||| Sbjct 80804 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 80863 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 80864 CCCACATTGGGC 80875 >seq13 Length=349228 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||||||||| | || ||||||| || |||||||||||||||||| Sbjct 194029 GCCCGGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 194088 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 194089 CCCACATTGGGC 194100 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 205414 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 205355 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 205354 CCCACATTGGGC 205343 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 207082 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 207141 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 207142 CCCACATTGGGC 207153 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 294482 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 294423 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 294422 CCCACATTGGGC 294411 >seq1 Length=1017535 Score = 104 bits (114), Expect = 4e-17 Identities = 214/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTC-T 10029 |||||||||||||| ||||||||| | || || | ||||| ||||| || ||||| | Sbjct 200779 CTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAGT 200838 Query 10030 CGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGA 10089 || | || | ||| || ||||| || || | ||||| || || ||||||| Sbjct 200839 CGCCTTGTAAAT-CTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGA 200897 Query 10090 TGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAA 10149 ||||||||| ||| ||||||||||||||||| |||| | || | ||||| | Sbjct 200898 TGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACCGGCAACGCGTCCGTCA 200957 Query 10150 TGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACA 10209 ||| || | ||| | |||||||| || || ||||| || ||| ||| || | Sbjct 200958 GGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGTGCG 201017 Query 10210 GCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGC 10269 | | ||||| | ||| | || || |||| | |||||| |||||||||| Sbjct 201018 GTCGGCGTTCGAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGC 201077 Query 10270 GGCTGATGAACTCGTT 10285 | ||||| |||||| Sbjct 201078 GCGAGATGAGCTCGTT 201093 >seq10 Length=415605 Score = 100 bits (110), Expect = 5e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 |||||||||||| | ||| ||||| | ||||| || ||||| | || || |||||||| Sbjct 169936 CTCGAAGAAGTTCGTCTTTCCCTCCATCGAAATTAGTTCCATCCAATCGAACGGGTTCTC 169995 Query 10031 GGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGAT 10090 | | | |||| || ||||| || || | ||||| || || ||||||| Sbjct 169996 CGTGTGGTAAAGCTTATCGTTCCCGAGCGCGACGAGTAGCCGGTCCGCAACACACTCGAT 170055 Query 10091 GTACTGGCTCATCAGGTCCGAGTTCATGCCAATC-ATGCGGCAGGGGATGGCGTCGCAAA 10149 |||||||| ||||| |||||||| || ||| | ||| || || | |||||| | Sbjct 170056 GTACTGGCACATCAACGATGAGTTCATACCGATCAAGGCGACA-GGCAGCGCGTCGGTCA 170114 Query 10150 TGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 ||| ||||||||| | |||||||||| ||| ||||| Sbjct 170115 AGAACTCCTTTTCGATCTCGACCGCTTCGGCGATGATGC 170153 >seq23 Length=251238 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 8049 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 8108 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 8109 CCCACATTGGGC 8120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620602836320