Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10 230 4e-55 seq1 141 2e-28 >seq10 Length=415605 Score = 230 bits (254), Expect = 4e-55 Identities = 440/646 (68%), Gaps = 2/646 (0%) Strand=Plus/Plus Query 244798 GGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTT 244857 |||||||||||||||||||||||| || ||||||| |||||| | |||| | || Sbjct 14556 GGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTA 14615 Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGT 244916 ||| | | | ||| || || | || | | | ||||| |||||| | Sbjct 14616 CCACAACTTCTGCGCCGAGATTGTAC-GCTTGGCGCGACCCTCCTTCTCGTACTTCTCGA 14674 Query 244917 ACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACA 244976 | || ||| ||||||| ||| |||| |||| |||||||| | || ||||| | Sbjct 14675 AGAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGCAGA 14734 Query 244977 TGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGG 245036 || ||||||| || | || ||| | | |||||| |||||||||||||| || | Sbjct 14735 ACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGCG 14794 Query 245037 CCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAA 245096 | ||||||||| | | | || ||| ||| |||||| | || || | | Sbjct 14795 CGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGA 14854 Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 |||| |||| |||| ||||||| ||||| | ||||| |||| |||||||| ||||||| Sbjct 14855 AGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTGT 14914 Query 245157 TGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 ||||||| |||||||| | | | |||||||| ||| || ||||||| |||| Sbjct 14915 TGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGC 14974 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 | || |||| |||||| ||||| |||||| | || | | | || |||| || | Sbjct 14975 CATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGAATCG 15034 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | | || | ||||| || |||||||||||| ||||| |||||| ||||| | Sbjct 15035 AAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTAGA 15094 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 |||| || || ||| || |||| ||| || |||||||| || || || || | | Sbjct 15095 TGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGAG 15154 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCG 245442 || | | | ||||||||| ||||| ||||| || |||||||| Sbjct 15155 GGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCG 15200 Score = 102 bits (112), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 |||||||||||||||||||| |||||||| | |||||| ||| | || | Sbjct 170483 CCCTGCATCAAGAAGAAGGCCGACTGGGCTTTGCGATGGATCTCTGATCCGAAAGCGGTG 170424 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||||||||| | || | || || | || |||||||| ||||||||||| || | ||| Sbjct 170423 TTCGGCGAGCGACTAATCGCGTTCGCAGCGGTCGAGGGGATCTTCTTCTCCGGATCGTTC 170364 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 || |||||||| ||||||||| || | | |||||||| | || |||||| Sbjct 170363 GCTTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCCGGCTTGACTTTCTCG 170310 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | || ||||| ||||||||||| |||||||| ||||| |||||||| | | Sbjct 170850 TCAAGCACGTTCTCGCCTTTTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCG 170791 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||| | ||||| ||| | ||||| ||||||||||||||||||||||| Sbjct 170790 AGCGGTTCTCGTCCGAGGTTCAGGTCGCAGAGGCTCGCTGCTTCTACGGCTTCCAGAT 170733 >seq1 Length=1017535 Score = 141 bits (156), Expect = 2e-28 Identities = 227/322 (70%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | |||||||||||||| || ||||| Sbjct 201094 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCTC 201035 Query 42866 GAGCCACCTC--AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCC 42923 | |||||| | || | | | | | | ||| || | ||||||| ||||| Sbjct 201034 G---CACCTCGAACGC-CGACCGCACCCCGACACGG-TCGAGCGCATCATCCGCGAGGCG 200980 Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || | ||||||| | |||||||| ||| | || |||| || ||| ||||||||||| Sbjct 200979 GTCGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAAC 200920 Query 42984 CACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT 43043 |||||||||||| |||||||| ||| |||||||||| | || | | | || Sbjct 200919 TCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGC 200860 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 | | ||||| || | ||| |||||||||||||| | |||||| ||||| Sbjct 200859 AACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 200800 Query 43104 GGCAAGACCAACTTTTTCGAGA 43125 |||||||||||||| ||||||| Sbjct 200799 GGCAAGACCAACTTCTTCGAGA 200778 Score = 127 bits (140), Expect = 4e-24 Identities = 137/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG-AGTCCCGACGCAAC 42691 ||||||||||||||||| || |||||||| | |||||| | | ||| || | Sbjct 201352 CCCTGCATCAAGAAGAAAGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTCCATC 201293 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || || || | ||||| || || ||||||||||||||||||||||||||||| | || Sbjct 201292 TTT-GGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 201234 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCG 42806 ||| |||||||||||||||||| || ||| || ||||| || |||||||||||| Sbjct 201233 CGCTTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCGGGTCTCACCTTCTCG 201179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337358538560