Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 8e-15 seq10 89.7 1e-12 >seq1 Length=1017535 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||| || |||||| | ||||||||||| || || |||||||| | Sbjct 200935 GCTGATCGGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTT 200876 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | || || | ||||| | | ||||| || | ||||||||| Sbjct 200875 GCTCGTCGCGCTCGGCAACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGA 200816 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | || ||| | | || || || ||||||||||| Sbjct 200815 CATGATCTCGATGGAGGGCAAGACCAACTTCTTCGA 200780 >seq10 Length=415605 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||| | ||||| || || | ||||||||| ||| | |||||| | || || || Sbjct 170151 ATCATCGCCGAAGCGGTCGAGATCGAAAAGGAGTTCTTGACCGACGCGCTGCC-TGTCGC 170093 Query 243562 CTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||||| | ||| | ||||||||||| | || || ||||| | Sbjct 170092 CTTGATCGGTATGAACTCATCGTTGATGTGCCAGTACATCGAGTGTGTTGCGGACCGGCT 170033 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | || || | ||| || | ||||||| || | | ||||| Sbjct 170032 ACTCGTCGCGCTCGGGAACGATAAGCTTTACCACACGGAGAACCCGTTCGATTGGATGGA 169973 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 || |||||| | | || || || ||||||||||| Sbjct 169972 ACTAATTTCGATGGAGGGAAAGACGAACTTCTTCGA 169937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877795618600