Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10 143 3e-29 seq1 82.4 9e-11 >seq10 Length=415605 Score = 143 bits (158), Expect = 3e-29 Identities = 424/644 (66%), Gaps = 15/644 (2%) Strand=Plus/Plus Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || |||||||| |||||| | || | |||||||| |||| || || || || | | Sbjct 14557 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTAC 14616 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | | || ||| | | | || ||||| || ||||||| ||||||||| | | Sbjct 14617 CACAACTTCTGCGCCGAG-ATTGTACGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 14675 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 ||| || ||||| || || | | || ||| || || |||| | | |||||||| Sbjct 14676 GAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGCAGAA 14735 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || | ||| | | || ||| || || | |||||| ||||| |||||||| || || Sbjct 14736 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGCGC 14795 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 ||||||| || || ||| ||||||| | || || || || | || | || Sbjct 14796 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 14855 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACG 114942 ||| | ||| || ||||||||||| || ||||| | ||||| | || ||| | Sbjct 14856 GTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTT--G 14913 Query 114943 ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002 | || | |||| || || | ||| ||| || || ||||| ||||| || | ||| Sbjct 14914 TTG-CCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGAT 14972 Query 115003 ACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGG 115060 |||| || | ||| || || || ||| ||||| || | || | || | || Sbjct 14973 GCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGA 15030 Query 115061 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 115120 || | ||| || || || || ||| ||||| ||||||| | |||| || || Sbjct 15031 ATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCG 15090 Query 115121 TAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGC 115180 ||||| || ||||||||||| ||| | | || ||||||||| ||| | ||| || Sbjct 15091 TAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGG 15150 Query 115181 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 || ||||| |||||||| || || || | |||||| |||| Sbjct 15151 TGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAA 15194 >seq1 Length=1017535 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 126091 CGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 126150 ||||||| || || ||||||||||| |||||||| | |||||| || | | || || Sbjct 201179 CGAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAACGA 201238 Query 126151 ACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 |||||||||||||| ||||| || |||||||| | || || ||| ||||| Sbjct 201239 GCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAG 201293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352435160480