Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq10 210 2e-49 >seq10 Length=415605 Score = 210 bits (232), Expect = 2e-49 Identities = 441/656 (67%), Gaps = 6/656 (1%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | ||||||||||| ||| ||||| | || ||| || |||| || | Sbjct 15353 TACTTCGGTTTCAAAACTCTCGAGCGCTCGTATTTGCTGCGGATCGACGGCAAAGTGGCG 15294 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||| || || || |||| |||||||| ||| |||| || ||||| | |||||| | Sbjct 15293 GAGCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAG 15234 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG---GCCACCCCG 93900 || | | | | || ||| ||| | | || || || | || Sbjct 15233 CGTGCTATCGAAACCTACAACTTGATGTCGGA---GCGCTACTTCACTCACGCGTCGCCC 15177 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 || ||||||||||| || ||||| || || | || || || ||||| | || | Sbjct 15176 ACGCTGTTCAACGCCGGTACCCCTCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATG 15117 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 ||| |||||| ||| || || | ||||| |||||| || ||| |||||| || Sbjct 15116 CAGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAG 15057 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 ||||| || ||||| | | ||| || | || || | ||||| |||||| | Sbjct 15056 ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGACCGGTTCGTACATCGCC 14997 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || || ||| ||| || ||| |||| ||||||||||| |||||||||||| ||||| Sbjct 14996 GGCACGAACGGCTACTCGAATGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCG 14937 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||||||||| || || | | | || | |||||| |||| || ||||| Sbjct 14936 CGTTACGTGGACCAAGGAGGCAACAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCG 14877 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| ||| | | ||| ||||||| || |||||||||||||| || | Sbjct 14876 TGGCACGCCGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAAGAAGTC 14817 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || |||||||||||| ||| || ||| | || ||||| || ||| ||||||||||| Sbjct 14816 CGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTGTTCATGGAACGCGTCGAG 14757 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGT 94376 | ||| ||| ||| || || || ||| ||| ||||| || |||||| Sbjct 14756 CAGAACGCCGAGTGGCCGCTGTTCTGCCCCGCTGAGGCGCCCGGCCTCCACGACGT 14701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722235289760