Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq10 102 8e-17 seq13 87.8 2e-12 >seq1 Length=1017535 Score = 158 bits (174), Expect = 1e-33 Identities = 231/321 (72%), Gaps = 7/321 (2%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| |||||||| ||||| || | Sbjct 201093 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCT-- 201036 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | | |||||| || | |||| || |||||||| Sbjct 201035 -CGCACCTCGAACGCCGACC-GCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGT 200978 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 || ||||| | ||||| | |||| |||| |||||||| ||||| | ||||||||| | Sbjct 200977 CGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAACTC 200918 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 | | ||||||| |||||||||||||||| || || || || | || |||||| || Sbjct 200917 GGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGG-CA 200859 Query 52742 GCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | ||| | || ||| || || ||||| || |||||| ||| || ||| | |||| Sbjct 200858 ACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAGG 200799 Query 52801 GCAAGACCAACTTTTTCGAGA 52821 ||||||||||||| ||||||| Sbjct 200798 GCAAGACCAACTTCTTCGAGA 200778 >seq10 Length=415605 Score = 102 bits (112), Expect = 8e-17 Identities = 152/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || ||||| | |||||||||||||| || || | ||||||||| |||| || | || Sbjct 170142 GAAGCGGTCGAGATCGAAAAGGAGTTCTTGACCGACGCGCTGCCTGTCGCCTTGATCGGT 170083 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||| | || |||||| |||||||||||| ||| ||||| || || | || | Sbjct 170082 ATGAACTCATCGTTGATGTGCCAGTACATCGAGTGTGTTGCGGACCGGCTACTCGTCGCG 170023 Query 52734 CTCGGGCAGCCAAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTAT-GAACAACATT 52790 |||||| | ||| ||| | | | || || ||||| || | || |||| | ||| Sbjct 170022 CTCGGGAACGATAAG--CTTTACCACACGGAGAACCCGTTCGATTGGATGGAACTA-ATT 169966 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGA 52821 ||| | ||||| ||||| ||||| ||||||| Sbjct 169965 TCGATGGAGGGAAAGACGAACTTCTTCGAGA 169935 >seq13 Length=349228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | || | | | |||||||| || ||||||||||| Sbjct 151915 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 151856 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| | |||| |||||||| ||||| || || Sbjct 151855 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 151796 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| |||||| ||| Sbjct 151795 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 151736 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593 |||| || | ||| || || || || Sbjct 151735 TCGAGGGTGATCGTCTTGCCCGTGAG 151710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261432288320