Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq45 123 2e-23 seq30 107 2e-18 seq1 95.1 1e-14 seq13 87.8 2e-12 >seq45 Length=127924 Score = 123 bits (136), Expect = 2e-23 Identities = 173/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| |||||| || | || | ||||| || | || ||||| || || || || Sbjct 357 CTCTACTG-TCCACCACGAAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTT 299 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 |||||| | ||||| || || ||||| || || || ||||||| |||||||| Sbjct 298 GTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTG 239 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 ||||| || ||||||||||||||| ||| || ||||| |||| |||| ||||||| Sbjct 238 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCG 180 Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||| |||| || | ||| ||||| || || || || || || ||||||||| Sbjct 179 AGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 121 >seq30 Length=195187 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| || || ||||| || || Sbjct 195005 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 194946 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 194945 GCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 194886 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| |||| || | ||| ||||| ||||| || Sbjct 194885 ACGTTG-TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAGGGT 194827 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 194826 CTTGACAAAGATTTGCAT 194809 Score = 104 bits (114), Expect = 2e-17 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || ||||||| |||||||| ||||| || ||||||||||||||| | Sbjct 195185 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 195126 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| |||| |||| ||||||| |||||| |||| || | ||| || Sbjct 195125 ATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTT 195067 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| || || || || || || ||||||||| Sbjct 195066 GCCCGTGAGGGTCTTGACGAAGATCTGCATG 195036 >seq1 Length=1017535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/330 (68%), Gaps = 25/330 (8%) Strand=Plus/Minus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTA- 47299 |||||||| |||||| | ||||| || || |||||| |||||||||| || || || Sbjct 201093 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCTCG 201034 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTC-AGCGACATGTTTGCCGAAG 47358 || | | | | ||| | | || ||| ||| |||| ||| | ||| | Sbjct 201033 CACCTCGAACGCCGACC-------GCACCCCGACACGGTCGAGCG-CATCATCCGCGAGG 200982 Query 47359 CCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCG--AATCTTTAGTGGGAAT 47416 | ||||| || ||| ||||| | | || || |||| | || || | || || Sbjct 200981 CGGTCGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGA--TCGGCAT 200924 Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476 |||| |||| | ||| | |||||||||| |||||||||||||| ||||||| ||| Sbjct 200923 GAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCT 200864 Query 47477 ----AAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | | ||||||||| | | || || ||||| |||||| ||| || | Sbjct 200863 CGGCAACGAA----AAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCT 200808 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGA 47562 || | ||||||||||||||||| ||||||| Sbjct 200807 CGATGGAGGGCAAGACCAACTTCTTCGAGA 200778 >seq13 Length=349228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | || | || | || ||||| || || || ||||| || Sbjct 151915 CCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 151856 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || || |||| | |||||||| ||||| || Sbjct 151855 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 151796 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||||| | |||||| Sbjct 151795 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGAC 151737 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| ||| | ||| ||||| || || Sbjct 151736 CTCGAGGGTGATCGTCTTGCCCGTGAG 151710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499872773440