Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10 158 1e-33 seq1 82.4 9e-11 >seq10 Length=415605 Score = 158 bits (174), Expect = 1e-33 Identities = 427/642 (67%), Gaps = 11/642 (2%) Strand=Plus/Plus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||||||||| | || | |||||||| |||| || || || || | | Sbjct 14557 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTAC 14616 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | || ||| | | | || ||||| || ||||||| ||||||||| | | Sbjct 14617 CACAACTTCTGCGCCGAG-ATTGTACGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 14675 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 ||| ||| ||||| || || | || ||| || || |||| | | || ||||| Sbjct 14676 GAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGCAGAA 14735 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 || | ||| | | || ||| || || | |||||| ||||| |||||||| ||||| Sbjct 14736 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGCGC 14795 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 ||||||| || || ||| ||||||| | || || || || | || | || Sbjct 14796 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 14855 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC--GAC 116905 ||| | ||| || ||||||||||| || ||||| | ||||| | || | || | Sbjct 14856 GTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTGTT 14915 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 | || | |||| || || | |||||| ||| || ||||| ||||| || | ||| | Sbjct 14916 G-CCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGC 14974 Query 116966 CATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 ||| || | ||| || || || ||| ||||| || | | || | || | ||| || Sbjct 14975 CATTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGAAT 15032 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 | ||| || || || || ||| ||||| | ||||| | |||| || |||| Sbjct 15033 CGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTA 15092 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||| || ||||||||||| ||| | | || |||||||||| ||| | ||| || Sbjct 15093 GATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTG 15152 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 || ||||| |||||||| || || || | |||||| |||| Sbjct 15153 AGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAA 15194 >seq1 Length=1017535 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 127564 CGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 127623 ||||||| ||||| ||||||||||| |||||||| | |||||| || | | || || Sbjct 201179 CGAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAACGA 201238 Query 127624 GCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGA 127680 ||| ||||||||||| ||||| || |||||||| | || || || |||| ||| Sbjct 201239 GCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGA 201298 Query 127681 GCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGA 127739 ||| | || | | |||| ||| ||||| | || || |||| ||| || |||| Sbjct 201299 CCGG----TCGTCCGAGATCCACCGCATAGCCCAGTCGGCTTTCTTCTTGATGCAGGGGA 201354 Query 127740 CGGT 127743 | || Sbjct 201355 CTGT 201358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506003660960