Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10 114 2e-20 seq1 109 9e-19 >seq10 Length=415605 Score = 114 bits (126), Expect = 2e-20 Identities = 354/537 (66%), Gaps = 18/537 (3%) Strand=Plus/Plus Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 ||||| ||||||||| ||||||||| || | || || || || || | | | | || Sbjct 14767 TCCATGAACAGGTCGGGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCC 14826 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAA 205284 | || ||||||| | ||| || ||| || | |||||||||||||||||||| | Sbjct 14827 TTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGATGTCGGCGTGCCACGGCTCAAG 14885 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | || | ||||| || | |||||| || || |||||||| || | | | Sbjct 14886 GTAGATCGCGAACGCGCCGGGTCGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTT 14945 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404 |||||| || || ||||| ||||| | || || | | |||||||||| | |||| Sbjct 14946 GTTGAAGACGCGGAGCATAGGCACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTA 15005 Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464 ||| || || | | |||| || | || |||||||| | | ||||| ||| Sbjct 15006 CGAACCGGTCGCGCGGATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGAT 15065 Query 205465 CTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 | |||| | ||||| || ||| |||||||||| |||| || |||||| || || | Sbjct 15066 GAGCGCGCAAGTCTTG-AGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGA 15124 Query 205524 CCAGATAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 | || |||| || | || | || || ||| || |||| ||| |||||||| Sbjct 15125 CGAGGAAGCAGGACGAGAGTTGCGGGTGAG-GGGTACCGGCGTTGAACAGCGTGGGCGAC 15183 Query 205583 GCGTGGCTGAAGCGCTTCTCGCTCAAACACC----TGTAGGTCTC--CAGCACGCTCTCC 205636 ||||| ||||| | ||||| ||| | ||||||| || |||||| || Sbjct 15184 GCGTGAGTGAAG----TAGCGCTCCGACATCAAGTTGTAGGTTTCGATAGCACG--CTTG 15237 Query 205637 AGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCC 205693 | ||| ||||| || || | ||| | | ||||| | ||| ||||| | |||| Sbjct 15238 ATGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGAGCATGTGCTGAGGACGCTCC 15294 Score = 96.9 bits (106), Expect = 6e-15 Identities = 217/323 (67%), Gaps = 11/323 (3%) Strand=Plus/Plus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 ||||||| ||||| ||||| |||||||| || ||| |||||| | |||| ||||||| Sbjct 169935 TCTCGAAGAAGTTCGTCTTTCCCTCCATCGAAATTAGTTCCATCCAATCGAACGGGTTCT 169994 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 | ||| || |||| ||||| || | || | || ||| || ||| | |||| Sbjct 169995 CCGTGTGGTAAAGCTTATCGTTCCCGAGCGCGACGAGTAGCCGGTCCGCAACACACTCGA 170054 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| |||||| | |||| || || | || || || ||||| || | || Sbjct 170055 TGTACTGGCACATCAACGATGAGTTCATACCGATCAAGGCGACAGGCAGCGCGTCGGTCA 170114 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG-TTCGTACC-- 159887 |||||||| || |||||||||||||||| | || | | ||| || | | | | Sbjct 170115 AGAACTCCTTTTCGATCTCGACCGCTTCGGCGATGATGCGGGCGACGCGATGAGGAGCGG 170174 Query 159888 -CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| || | | ||| ||| |||||||| ||||| ||| ||| || || Sbjct 170175 GACGGC--GCTC-----GAGGTGAGAAAAGAGGAGGCAGGCAAAATCGGTGTGAAGACCT 170227 Query 159947 TCGTCCCGAGAGATGAACTCGTT 159969 ||||| || ||||||| |||||| Sbjct 170228 TCGTCGCGCGAGATGAGCTCGTT 170250 >seq1 Length=1017535 Score = 109 bits (120), Expect = 9e-19 Identities = 221/324 (68%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 ||||||| |||||||||||||||||||| || || ||||| || |||| ||||| Sbjct 200778 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAG 200837 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 || | | || ||| ||||| || | ||||||| ||| || ||||| |||| Sbjct 200838 TCGCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGA 200897 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| ||||| | || |||| || || | |||| | || || | ||| |||| || Sbjct 200898 TGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACCGGCAACGCGTCCGTCA 200957 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TC---GTAC 159886 | ||||| | ||| ||| ||||||| ||| | || || ||| ||| || || | Sbjct 200958 GGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGAC-CGTGTCGGGGTGC 201016 Query 159887 -CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||| | | | ||| | || || ||||| ||||||||| ||| || || Sbjct 201017 GGTCGGCGTTC-------GAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGGAGACC 201069 Query 159946 CTCGTCCCGAGAGATGAACTCGTT 159969 |||||| || ||||||| |||||| Sbjct 201070 CTCGTCGCGCGAGATGAGCTCGTT 201093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153649447360