Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 143 3e-29 seq30 131 2e-25 seq45 125 7e-24 seq13 123 2e-23 seq1 105 7e-18 seq17 98.7 1e-15 >seq10 Length=415605 Score = 143 bits (158), Expect = 3e-29 Identities = 126/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || |||||||| ||||| || ||||| | ||||| || || | ||| ||||| Sbjct 170732 GATCTGGAAGCCGTAGAAGCAGCGAGCCTCTGCGACCTGAACCTCGGACGAGAACCGCTC 170791 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||| || || ||||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct 170792 GACGAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAAAAGGCGAGAACGTGCTTGAT 170851 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCG 133374 || || | || ||||||||||| |||||||||||| Sbjct 170852 AAAGTGCTGTTCCTTGTCGTTCAACCGCTCCCAGTCG 170888 Score = 123 bits (136), Expect = 2e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||||||||||||||||||||| ||||| || ||||||||||| |||| ||||| || Sbjct 170313 GAAAGTCAAGCCGGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAAGCGAACGATCC 170372 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||||| |||||||| || ||||| || | || |||||||||||| |||| Sbjct 170373 GGAGAAGAAGATCCCCTCGACCGCTGCGAACGCGATTAGTCGCTCGCCGAACACCGCTT- 170431 Query 133065 TTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | | | | |||||| |||| ||||| |||||||| | |||| ||| || Sbjct 170432 TCGGATCAGAGATCCATCGCAAAGCCCAGTCGGCCTTCTTCTTGATGCAGGG 170483 >seq30 Length=195187 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || |||||||| || ||||| |||| |||||| | || Sbjct 194809 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 194868 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 194869 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 194927 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| ||||||||| || ||||| Sbjct 194928 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 194987 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| || || | || || ||| | | |||||| Sbjct 194988 CATCCAGAAGGAGTCGACCCTTCACCTCGTCCTCCGTCTCCGCGGCGGC 195036 >seq45 Length=127924 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || ||||| |||| |||||| || | Sbjct 122 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 181 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 182 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 240 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||||| || |||| ||||||||| || ||||| Sbjct 241 GCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 300 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| || || ||||| || || Sbjct 301 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCG 336 >seq13 Length=349228 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||||||||| || |||||| |||| |||||| | |||||| | | |||| | || Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAA 151768 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || || Sbjct 151769 GGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGG 151828 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| ||||| ||| |||||||||||||| ||||| |||| || Sbjct 151829 CAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCT 151888 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || || ||| | || || Sbjct 151889 CCACCTCGTCCTCCGCTTGCGCGGTGG 151915 >seq1 Length=1017535 Score = 105 bits (116), Expect = 7e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||| ||||| || |||||||| || |||| ||||| |||||| |||||| Sbjct 201192 CCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAACGAGCCCGAGAAGAAG 201251 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || |||||||| || || || ||| | | | | Sbjct 201252 ATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGACCGGTCGTCCGAG 201311 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 ||||| |||| ||||| ||||| || | |||| ||| || Sbjct 201312 ATCCACCGCATAGCCCAGTCGGCTTTCTTCTTGATGCAGGG 201352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 |||| |||||||||| || ||||||||||||||||| |||||| || |||||||||| Sbjct 201729 CGAACCGCTCGACCAAGTTCTCGTTGACGATGCCGTCCGAGGCGGCAAAGAAGGCCAGCA 201788 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA--AGCG-CTCCCAGTCGCGCGTGTCCT 133384 ||||||||||||| | ||||| || || | || ||||||| | | |||||| Sbjct 201789 CGTGCTTGATGAAGTACTTCTCGTCATCCTTGAGCTTCGTGTCCCAGTGGTTCATGTCCT 201848 Query 133385 TGGACAGGTCC 133395 |||| || ||| Sbjct 201849 TGGAGAGATCC 201859 Score = 91.5 bits (100), Expect = 1e-13 Identities = 217/323 (67%), Gaps = 14/323 (4%) Strand=Plus/Plus Query 132626 TCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685 |||| || || || || || ||||||| || || | |||||| || || ||||| | Sbjct 200778 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAG 200837 Query 132686 CTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACT 132742 | ||||| ||| | |||||| | ||||||||| || |||||| || |||| Sbjct 200838 TCGCCTTGTAAATCTTTTCGTTGCCGAGCG---CGACGAGCAACCGGTCGGCGACAAACT 200894 Query 132743 CGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||||| || ||||| || | || | || | ||| ||||||| ||| || | Sbjct 200895 CGATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACCGGCAACGCGTCCG 200954 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT-TTCCCTAACG---CGCGCC 132858 | || || ||||||||| |||||||| ||| || ||| | | | || || | Sbjct 200955 TCAGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGT 201014 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| |||| |||| | | ||| ||| | || ||| ||||||||| || | ||| Sbjct 201015 GCGGTCGG-CGTT---CGAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGGAGACCC 201070 Query 132919 TCGTCCCTGGAAATGAGTTCGTT 132941 ||||| | || ||||| ||||| Sbjct 201071 TCGTCGCGCGAGATGAGCTCGTT 201093 >seq17 Length=321613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | || ||||| Sbjct 237287 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 237346 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| ||||||||| |||||||||||||| ||||| |||| || || Sbjct 237347 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 237405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171824663040