Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq61 293 3e-74 seq24 174 2e-38 >seq61 Length=92854 Score = 293 bits (324), Expect = 3e-74 Identities = 545/800 (68%), Gaps = 0/800 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | ||||||||| ||||| | || ||||| ||||| ||||| || ||||| Sbjct 2814 TCGCCGGTGAGGATGGCGGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 2755 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||||| ||| | || || | | | || | |||| Sbjct 2754 ATCGACTTGTTGGGCTCCTTGCCGTTGAAAAAGTCGGACACGAGCTTCTGGACACGCGGG 2695 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || || || | || || ||||| ||| Sbjct 2694 ATACGGGTCGAACCGCCGACGAGGACAATCTCGTTGACCGACTGCTTGTCAATCTTCGAG 2635 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || ||||| || ||||| ||||||||||| || || ||| Sbjct 2634 TCGCGGAGGACCTTCTCGACCGGCTCCATGGTGCCGCGGAACAAGTCGGCGCAGAGCTCC 2575 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || || ||||| || || || || || || | ||| ||| | | ||| || || Sbjct 2574 TCGAACCGGGCGCGGGTGATCGAGGTGTAAAAGTCGATGCCCTCGAAGAGCGAGTCGATC 2515 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || ||||| || || || | ||| || | || ||||| |||||||| || || || || Sbjct 2514 TCGATGGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAGGCGGTGCGG 2455 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| | | || ||||| | || || || ||||| Sbjct 2454 AGACGGCGGAGGGCGCGGGCGTTGGACGTGAGGTCCTTCTTGTTCTTGCGCTTGAACTCG 2395 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | ||||||| | ||| | || || || ||||| || | ||| || || || Sbjct 2394 GCGCAGAAGTGGGTGACGAGGCGGTTGTCAAAGTCCTCACCGCCGAGGTGGGTGTCACCG 2335 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || ||||| ||||| || ||||| || | || || | | | ||| || || ||||| Sbjct 2334 GCAGTCGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGTG 2275 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 || || |||| |||||| ||||| |||||| | ||| | || ||||| ||||| ||| Sbjct 2274 CCGCCGCCCAAGTCAAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCCG 2215 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 |||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 2214 TACGCGATCGCGGCGGCGGTCGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGATG 2155 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 || | || || || ||||| || || ||||| ||||| |||||||||||||| || ||| Sbjct 2154 GTACCGGCGTCCTTGGTCGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGGGACGGTGACG 2095 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| |||| | ||||| || | || || | || ||||| ||| || Sbjct 2094 ACGGCGTTGCTGACGGTGCCTCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAGG 2035 Query 7790 ACCATCGATGAAATCTCTTC 7809 |||||||| || ||||| || Sbjct 2034 ACCATCGACGAGATCTCCTC 2015 >seq24 Length=250653 Score = 174 bits (192), Expect = 2e-38 Identities = 544/835 (65%), Gaps = 17/835 (2%) Strand=Plus/Plus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| || ||||| ||| Sbjct 55915 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCCGGGTTGATC 55974 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || ||||| | |||| || | || || | | || || |||||||| Sbjct 55975 GACTTGTTCAGCTGGCGACCGCCGAAGAACTCGGAGACGAGCGACTGGATCTTCGGGATA 56034 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || ||||| |||||||| | || || || | || || || || ||||| | ||| Sbjct 56035 CGGGTCGAGCCACCGACGAGGACAATGTCGTCGACCTTGGAGCGGTCCATCTTGGCGTCC 56094 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT--CCT 7250 || || ||||| || || | ||||| ||| | | | ||| Sbjct 56095 TTGAGGACCTTCTCGACGGGGTCGAGGGTCGAGCGGAAG--GTCGCGGCGTTGATGTCCT 56152 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | ||||| |||||||| || || | |||| || |||| | | | | ||| || | | Sbjct 56153 CGAAACGGGCACGGGTGATCGAAGCCGAGAAGTCCTCGCCCTGGAAGAGCGAGTCGACCT 56212 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | | ||| || || | ||| || | || ||||| || ||||| || || | || | Sbjct 56213 CGACGGTGGTCTGGGTGACCGACGAGAGGGTGCGCTTCGCACGCTCGCAGGCGGACCGGA 56272 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT-AAACTCT 7429 ||| || |||||||| | || || || || || ||| || | | | | |||||| Sbjct 56273 GACGGCGGAGGGCACGGGCGTCGCCCGAGATGTCGAGCTTC-GTCTTCTTCTCAAACTCC 56331 Query 7430 TCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | |||||| |||| |||| || || || |||||||| | ||| || || || Sbjct 56332 TTCTTGAAGTGCTCGA-GGAGGGCGTTGTCAAAGTCCTCACCACCGAGGTGAGTGTCACC 56390 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| |||||| || || || | | ||| ||||| ||||| Sbjct 56391 GGCGGTGGCCTTGACGGCAAAGACGCCACCAGTGATCGAGAGGAGCGAGACATCGAACGT 56450 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT--CTT 7599 || ||||||| ||| |||||||| || || | || | | ||| || || Sbjct 56451 GCCGCCACCCAAGTCGAAAATGAGGACCATCTTCTCCTTCTGCGACTTCTCGGTCGCCTC 56510 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 |||| ||||||||||| || || || || || || || || ||||| ||| | || Sbjct 56511 GCCGAGGCCGTACGCGATGGCGGCGGCGGTCGGCTCGTTGATGATACGGAGAACATCGAG 56570 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||| || || || | || || || |||| | || ||||| ||||| ||||||||||| Sbjct 56571 GCCGGCGATCGTGCCGGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAGGCCGG 56630 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || ||||| || | | |||| | ||| ||||| | | || ||| | || || | Sbjct 56631 GACGGTGACGACGGCCTTCTTGACCTGCTTGCCGAGCTTGGCCTCGGCGGTGTCCTTGAG 56690 Query 7780 TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| || ||||| | || ||||| | | || ||||| ||| | |||||| Sbjct 56691 CTTGGTGAGGACCATGGCCGAGATCTCGGCGGGCGAGAACTGCTTCTTCTCACCG 56745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131561491040