Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq45 102 5e-17 seq30 95.1 8e-15 >seq45 Length=127924 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| || ||||| ||| | || | || || Sbjct 330 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 271 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | || |||||||| |||| | ||||||||||| Sbjct 270 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 211 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || || ||| || |||| || || || || Sbjct 210 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 151 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || ||||||||||| Sbjct 150 CCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq30 Length=195187 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || ||||| ||| | || | || || ||||| || ||||| || Sbjct 194999 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 194940 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| |||||| Sbjct 194939 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 194880 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || || || || ||||| || ||||| ||| Sbjct 194879 TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACA 194820 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 194819 AAGATTTGCATA 194808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632982790368