Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10 127 4e-24 seq1 116 7e-21 >seq10 Length=415605 Score = 127 bits (140), Expect = 4e-24 Identities = 212/306 (69%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||||||||| |||| |||||||||| ||| ||||| | | | || ||| Sbjct 14769 CATGAACAGGTCGGGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTT 14828 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| ||||| || || || ||||| |||||||| |||||||||||||| | ||| Sbjct 14829 GCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTA 14888 Query 213941 GATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTT 213997 ||| || || ||||| | || | ||||| || |||||||| | ||| |||| Sbjct 14889 GATCGCGAACGCGCCGGGTCGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTT 14948 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 ||||| ||| || | || || | || || || | ||||| || || || || ||||| Sbjct 14949 GAAGACGCGGAGCATAGGCACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGA 15008 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 |||| || | | |||| || || || || || || || || ||||||||| | Sbjct 15009 ACCGGTCGCGCGGATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAG 15068 Query 214118 GGCGCA 214123 ||||| Sbjct 15069 CGCGCA 15074 Score = 113 bits (124), Expect = 8e-20 Identities = 124/163 (76%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| ||| | || |||||||| || || | ||||| || || ||||||||| Sbjct 170323 CCGGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAAGCGAACGATCCGGAGAAGAAG 170382 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || ||||||||| | || | ||| ||||| || ||| || ||| Sbjct 170383 ATCCCCTCGACCGCTGCGAACGCGATTAGTCGCTCGCCGAACACCGCTTTCGGATCAGAG 170442 Query 48311 ATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| | ||| |||||||| ||||||||||||||||| || Sbjct 170443 ATCCATCGCAAA--GCCCAGTCGGCCTTCTTCTTGATGCAGGG 170483 >seq1 Length=1017535 Score = 116 bits (128), Expect = 7e-21 Identities = 133/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 48179 GAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG 48238 |||||| |||||| ||||||| || | || ||||||||||| || | ||||| ||| Sbjct 201180 GAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAACGAG 201239 Query 48239 CCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA---A 48295 || ||||||||||||||||| || || ||||||||| || | || || ||||| | Sbjct 201240 CCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACC-AAAGATGGA 201298 Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || || ||| |||||||| | |||||||| || |||||||||||||| || Sbjct 201299 CCGGTC--GTCCGAGATCCACCGCATAGCCCAGTCGGCTTTCTTCTTGATGCAGGG 201352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530983511040